Bradyrhizobium daqingense: LPJ38_06855
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Entry
LPJ38_06855 CDS
T07756
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LPJ38_06855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdg03400
]
LPJ38_06855
Enzymes [BR:
bdg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LPJ38_06855
DNA repair and recombination proteins [BR:
bdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LPJ38_06855
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LPJ38_06855
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPJ38_06855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
ExoI_C
Motif
Other DBs
NCBI-ProteinID:
UFS90489
LinkDB
All DBs
Position
1488550..1489956
Genome browser
AA seq
468 aa
AA seq
DB search
MSFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETRSRLQPHVLPHPSALRTNGL
PIESLTDSSLPSHYTMVGDIRRTLISWSPAVFVGFNSIRFDEEMLRHALFQCLYPAYLTS
NHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGVAHARAHDAMSDVL
ATLELSRLVYRRSPELWQRFVRFSNKATVADFIEVEDGFVLTEFFGGQAYHTSVVCIGRD
PDQANGRLCLSLNEDMGRLAAMSDLELQVHLTQKPSPIRRFRINAAPTLTAFYDAPEHML
DGGSMGATGDRACLMKADTGLCARLVAAYMAAREPYALSPHLEERIYSGFPGPADEARIA
AFHDARWEDRLAIVQGMEDERLRWFGLRLIYFEARSVLPEPTRLEVERYLTDQMTGDGSG
CLTIDQAMAETERVLGEFASPDDLLIQYRTYLQDRLARLEAYRTRLIA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgtctttttcgacaccgagacgacggggcttaagcgtggcttcgatcagatt
ctccacttcgccgctgttcgcaccgatgaaaacctgaacgaggtggctcggttcgagacg
cgctcgcgccttcagccacatgtgcttccccatccttcggcgcttcggacgaacggattg
ccgatcgagtcgttgactgattccagcctgccgtcgcactacaccatggtaggagatatt
cgccggaccttgatttcctggagccctgcggttttcgtcggcttcaactccatccgcttc
gacgaggagatgctgcgccacgccctcttccagtgcctatatccggcatatctgacaagt
aatcatcgaaactgccgcgccgatgcgctcagtctggtgatggccgccgatgccgtgtcg
cctgcgcaactagttgtgccggtcagcgaagaagggcggcggacatttcgcttgcaacag
ttggcggcggcaaatggcgtcgcacatgctcgggcacacgacgcgatgtccgatgtgctt
gcgacgctcgaactgagccgattggtctatcgaaggtctccggagttgtggcagcgcttc
gtgcgcttctcgaacaaagcgaccgtcgcggatttcattgaggtcgaagacggcttcgtg
ttgaccgagtttttcggcggccaagcttatcatacgtcggtcgtctgcatcggcagggat
cccgatcaggccaatggccggctttgcttgagtctcaacgaagacatgggccggcttgcc
gcgatgagcgatctcgaactgcaagttcatctgacgcagaagccaagtccgattcgtcgc
ttcaggatcaatgccgcgcccacgctgacggcgttctacgacgctcccgagcatatgctg
gatggcggttcgatgggcgccaccggagaccgggcctgtctcatgaaggcggacactggt
ctgtgcgcgcggcttgtggctgcttacatggctgcgcgcgagccctacgcattatctccg
cacctcgaagagcgcatctatagcggctttcccggtcctgctgatgaggcacgcattgcc
gcgttccacgatgcgcgatgggaggaccgcctcgcgatcgtccagggcatggaggacgag
cgactgcgctggttcgggctccggttgatctatttcgaagcgcgctcggttctccccgaa
cctactcgattggaggtcgagcgctacttgaccgatcagatgacaggcgacggttcgggc
tgcctcaccatcgatcaggcgatggcagagacggaaagggtgcttggcgagttcgccagt
ccagatgatcttctgatccaatatcgcacgtatctgcaggatcgactggcgcggcttgag
gcctatcggacacggctgattgcctga
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