Bradyrhizobium daqingense: LPJ38_22110
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Entry
LPJ38_22110 CDS
T07756
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bdg
Bradyrhizobium daqingense
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bdg03016
]
LPJ38_22110
Enzymes [BR:
bdg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LPJ38_22110
Transfer RNA biogenesis [BR:
bdg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LPJ38_22110
Prokaryotic type
tRNA splicing ligases
LPJ38_22110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
HTH_17
Motif
Other DBs
NCBI-ProteinID:
UFS86371
LinkDB
All DBs
Position
complement(4701674..4703014)
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AA seq
446 aa
AA seq
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MRRPDPYMERARELCLAAGIDPDSRVGEGRGQPAWCLYKDAARKEHLAREANATASSIAE
FRMQDTRFQNAPLKVFGPHEEATIAQMRNCMAVGNVVSGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAARLDTRFDDIAEIAPTIIRDVAKVISFGVGRANAERAEHDLF
DDGDAWRESDMESYRQKAVSQLGTVGSGNHYVDLMRDEEGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSELGRRYIAAMQLAGRYAYAGREWVVERVRQIIGGIVTE
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQKGFVGGSMGDDAVILEGVDSPEAKASL
YSTVHGAGRLFGRREAKRRFSRAEMDQWLNERGVTLIGADLDESPMAYRRLPDVLAQHAG
TVRVLHTLRPFAVAMAGEGEFDPWKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgacccgatccctacatggaacgcgcgcgcgagctctgtctcgccgccggcatc
gatcccgactcgcgcgtcggcgaaggacgcggccagcccgcctggtgcctgtacaaggat
gccgcgcgcaaggagcatctggcccgcgaggccaatgcgaccgcgagctcgatcgccgag
ttccggatgcaggacacccgcttccagaatgcgccgctgaaggtcttcggtccgcacgag
gaggcgaccatcgcgcagatgcgcaactgcatggcggtcggcaatgtcgtgtcgggcgtg
atctgcgccgacggccatctcggctatgcccagccggtcggcggggtcatcgcctatgag
aagcagatcagcatctccggcgtcggcttcgacatcggttgcggcaacatggcggcccgg
ctcgacacgcgcttcgacgacatcgcggagatcgctcccacgatcatccgcgacgtcgcc
aaggtgatctcgttcggcgttggccgtgccaacgcagaacgggccgagcacgacctgttc
gacgacggcgacgcctggcgcgagagcgacatggagtcctaccgccagaaagccgtgagc
cagctcggcacggtcggatctggcaaccactatgtcgacctcatgcgcgacgaggaaggc
ttcgtttggatcggcgtccacttcggaagccgtggtctcgggcatacctccgcgacgcgc
tacctcaaggccgccggcggcaaggacggcatgaacgttccgcccgccgtggtcgacgag
gattcagagctcggccgccgctacatcgcggcgatgcagctcgccgggcgctacgcctat
gcgggccgcgagtgggtggtcgagcgcgtccgccagatcatcggcggcatcgtgaccgaa
agcgtgcacaaccatcacaattatgcctggcgtgagacccacgacgggcgtgatctttgg
gtggtgcgcaagggcgcgacgccggcgtttcccggccagaagggattcgtcggcggctcc
atgggcgacgacgccgtcatcctcgaaggcgtcgacagcccggaagccaaggcgtcgctg
tactcgaccgtgcacggcgccggccgcctgttcggacgtagggaggcgaagcggcgcttc
tcgcgcgcggagatggaccagtggctcaacgagcgcggcgtcaccttgatcggtgccgac
ctcgacgagagcccgatggcctatcgccgcctgcccgacgtgctcgcgcagcacgccggc
actgtgcgcgtgctgcacacgctgcggccgttcgccgtcgccatggccggcgaaggcgag
ttcgatccgtggaaggactga
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