Bradyrhizobium daqingense: LPJ38_23420
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Entry
LPJ38_23420 CDS
T07756
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPJ38_23420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdg03019
]
LPJ38_23420
03009 Ribosome biogenesis [BR:
bdg03009
]
LPJ38_23420
Enzymes [BR:
bdg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LPJ38_23420
Messenger RNA biogenesis [BR:
bdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPJ38_23420
Ribosome biogenesis [BR:
bdg03009
]
Prokaryotic type
rRNA processing factors
LPJ38_23420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zinc_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
UFS86614
LinkDB
All DBs
Position
complement(4956270..4959380)
Genome browser
AA seq
1036 aa
AA seq
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MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNAR
RRGHGERVRSDIVEGLDAGADPAAQPVEGGALAAQAEGALHEGEHLHADAEHHGEHEGHD
HHDHGDHDHGDRQPHDEVHDHAHDHHDDHDHHGEHDHHDHDRADETPAPVAAVGAEPVVA
TESASEPQQAVASEEHAEPLAEAVTSAAEPADAVYAEAVYGAEAPLAETAEAAGEDEEED
DEDGEDAEEELVESVGGDDVLEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKG
AALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAG
ASRTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVA
GEAGYREARDFMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYVVI
NQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEK
RNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHV
RSVSSVALQLLRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENSFKVTLSVI
ADASVSGPQAYVIDRGEQVHTLEAAKALLVAQAAASPPPIVEEAYEDEEFDSELESEVET
EETEGLAEDQAAGDAGAEQDGQRRKRRRRRRGRGGQRDGELREDSSPTLPEVAVAASESD
EEAEAEQDGEEGEDQAARGEQQGSGDRRRRRGRRGGRRRRGGAEEGLAGSIGDELGVNQP
SEAAEAVADFDSPGNEAAPSIAQAERTPEPQAAQPEPRADSPAEVLAQPEPAPVATTVAP
EEEPADDKAARRRSTVREKVSFLLNSQPEPVTPVAQATEPVAAPVPAAEPAPEAADETPP
APRRAGWWSRRFGGGE
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgtggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaactgcgcggg
aatatctacctcgccaaggtcacgagggtcgaaccctcgctccaggccgccttcgtcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgaaatccatcccgactactaccag
atccccgtcgccgaccggcaggcgctgatcgaggccgaggaacaggcccatcgcgaggcc
gaggaagagagcgagaaccgctcccacggccgccgccgttcgcgccaccgcaacgcccgc
cgccgcggccatggcgagcgcgtgcgcagcgacatcgtcgagggcctcgacgcgggtgcc
gatcccgcggctcagccggtcgagggcggggccctggcggcacaggccgagggcgctttg
cacgaaggcgagcacttgcacgccgatgccgagcatcacggcgagcatgagggccacgat
caccacgaccatggtgatcatgatcacggcgatcgtcagccccatgatgaggttcacgat
cacgcccacgatcaccatgatgatcacgatcaccatggcgagcacgatcatcacgaccat
gatcgtgccgatgagacgcccgcgcctgtcgcggccgtcggcgccgagcccgtggtcgcg
accgagtccgcttcagagccgcagcaggctgtcgcctccgaagagcatgcggagcctttg
gccgaagccgtgacctccgcggccgagccggccgatgccgtttacgcagaggccgtgtac
ggcgccgaagcgccgctcgccgaaaccgcggaagcggcgggcgaagacgaggaagaggat
gacgaggacggcgaggacgccgaagaggagctcgtcgaatccgtcggtggcgacgacgtg
ctggaggaagtgcccgagcgcaccttccgcccccgccgccagtacaagatccaggaagtc
atcaagcgccgccaggtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaagggc
gccgcgctgacgacctatctgtcgctcgccggccgctacgccgtcctgatgcccaacacc
gcccgcggcggcggcatcagccgcaagatcaccagcgcccaggatcgttcgcgcctgaag
gaagtggtgcaggatctcgacgtgcccgagggcatgggcatcatcctgcgcaccgccggc
gcctcccgcaccaagcccgagatcaagcgcgacttcgaatatctgatccggatgtgggag
acggtgcgcgacctcacactgaagtcgcaggctccgaccctcgtctacgaggaaggctcg
ctgatcaagcgctcgctgcgcgacctctacaacaaggagatcgacgagatccaggtggcc
ggcgaagccggctaccgcgaagcgcgtgacttcatgaagatgctgatgcccgccaatgtc
agcgcggtgaagcaatatcgcgacggccagccgctgttctcacgcatgggcgtcgagagc
cagctggacgcgatgttctcgccgacggtgcagctgcgctcaggcggctatgtcgtgatc
aaccagaccgaggcgctggtctcgatcgacgtcaactcgggacgatcgacccgcgagcac
cacatcgaggacaccgcgctcaagaccaatctggaagcggccgaagaggtcgcccgccag
cttcgcttgcgcgacctcgccggcctgatcgtcatcgacttcatcgacatggacgagaag
cgcaacaaccgcgcggtcgagcgcaagctgtccgattgcctgaggcaggatcgcgcgcgc
atccaggtcggccgcatctcgcatttcggcctgctcgagatgtcgcgccagcgcatccgc
gccagcgtgctggagtcctcgaccgatccctgcccgcattgcgggggcaccggccacgtc
cgttcggtctcctcggttgcactccagctgctgcgcggcctcgaagagatcctgatgaag
ggcgcgacccataatctcgtggtccgcacccgcaccgacgtcgctctgtacgtgctgaac
cacaagcgcggtcatctgcgcgacctcgagaacagcttcaaggtcacgctgtcggtcatc
gccgatgccagcgtcagcggcccgcaggcctatgtgatcgaccgcggcgagcaggtgcat
acgctggaagctgccaaggcgttgctcgtggcgcaggcggccgcgagcccgccgccgatc
gtcgaagaagcttacgaggacgaggaattcgattccgagctcgaatcggaggtcgagacg
gaggagaccgaaggtctcgccgaagatcaggccgctggcgatgccggtgccgagcaggac
ggtcagcgccgcaagcgtcgccgccgccggcgcggccgcggtggccaacgcgacggcgag
ttgcgcgaggacagttcgccgacgctgcccgaggtcgccgtcgccgccagcgaaagcgac
gaggaagcagaggccgagcaggacggcgaggaaggcgaggaccaggccgcccgtggcgag
cagcagggcagcggtgaccgccgccgccggcgtggtcgccgcggcggacgccgtcggcgc
ggtggcgccgaggaaggtcttgccggctccatcggcgacgagctcggcgtcaatcagccc
tcggaagctgccgaggcggttgccgatttcgacagccccggcaacgaggcagcgccctcg
attgcgcaggccgagcgcacccccgagccgcaggccgcacagcctgaaccgcgcgccgat
tcgccggccgaggtgctggcccagccggagccggctcctgtcgctacgaccgtggcgccg
gaagaggagcccgccgacgacaaggccgcacgccgccgctccacggtccgcgaaaaggtg
agcttcctgctcaacagccagcccgagcccgtgacgccggttgcgcaggcgaccgaaccg
gttgcggctcccgtgccggcagctgaacccgcaccggaagcggccgacgaaacgccgccc
gccccgcgccgtgccggttggtggtcgcgccgcttcggcggcggcgaataa
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