Bradyrhizobium daqingense: LPJ38_26050
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Entry
LPJ38_26050 CDS
T07756
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03030
DNA replication
bdg03430
Mismatch repair
bdg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPJ38_26050 (dnaE)
03430 Mismatch repair
LPJ38_26050 (dnaE)
03440 Homologous recombination
LPJ38_26050 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdg03032
]
LPJ38_26050 (dnaE)
03400 DNA repair and recombination proteins [BR:
bdg03400
]
LPJ38_26050 (dnaE)
Enzymes [BR:
bdg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPJ38_26050 (dnaE)
DNA replication proteins [BR:
bdg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LPJ38_26050 (dnaE)
DNA repair and recombination proteins [BR:
bdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LPJ38_26050 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
UFS92859
LinkDB
All DBs
Position
complement(5505094..5508597)
Genome browser
AA seq
1167 aa
AA seq
DB search
MPSAGFVHLHVHSAYSLLKGSIKIAKLAELAKKDHQPALALTDTDNMFGALEFSDKMAGS
GIQPIVGCELAIDFGDQDPNARNALGPSRVVLLAAQERGYRSLMRLNSRAFLETPDTHAP
HIKFDWLDGETEGLIALTGGPDGPVSLALATGQAEIAALRCERLAGLFGDRLYVELQRHN
TDKERRIESGLIDIAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAETDREQLT
PDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASSDAAAVE
AAELKRQAEEGLANRLRVHGLSQGTTEEDYNKRLAFELDVIMRMKYAGYFLIVSDFIKWA
KAHGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQDRR
GEVIKYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV
TLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMY
RDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRDIHVDLATLPIDDA
ESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKH
GDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRAEMD
KQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHYPVE
FIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGDKTIYYALAALKGVG
IQAIDQIIEERNNRGLFTSLADFAARVNPRAINKRIIESFAAAGAFDTLEPNRARVFAGA
DSILAACQRAHQAETIGQNDMFGSSADAPSIMLPQIEPWLPAERLRREYDAIGFFLSGHP
LDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSDPTG
HFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDDAAAKTQKGLRI
FLRDTKPLESIAKRLAGPEIAAANGAAPKIGSPAIAPRSNGDGEVSLVMMLDLETEVEMK
LPGRFKVSPQIAGAIKAVAGVVDVQQV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgccggatttgtccaccttcacgttcactcggcctattcgctgctcaagggc
tcgatcaagatcgccaagctcgccgagcttgcgaagaaggaccaccagccggccctggcg
ctgaccgataccgacaacatgttcggtgcgctggagttctccgacaagatggcggggtcc
ggtatccagccgatcgtcggctgcgagctcgcgatcgatttcggcgaccaggatccgaat
gcgcgcaacgcgctcgggccctcgcgcgtggtgctgctggcagcgcaggagcgcggctac
cgcagcctgatgcggctgaactcgcgggcgttcctggagacgcccgatacccacgccccc
cacatcaagttcgactggctcgacggcgagaccgagggcctgatcgcgctcaccggcggt
ccggacggtccggtctcgctggcgctcgccaccgggcaggccgaaattgccgcgttgcgc
tgcgagcgcctcgctggcctgttcggcgaccgcctctacgtcgaattgcagcgccacaac
accgacaaggagcggcgcatcgagagcggcctgatcgacatcgcctatgccaagggcctg
ccgctggtcgcgaccaacgagccttatttcgccgcgaccgacgattacgaggcgcatgac
gcgctgctctgcatcgccggtggccggctgatcgccgagaccgaccgcgagcagctcacc
cccgatcaccgcttcaagacccgcgccgagatggcggtgttgttcgccgacattccggag
gcgctggcctcgacggtggagattgccgagcgctgctcgttccgcccgatgacgcgcaag
ccgatcctgccgttcttcacggtcggtgctgccgcaagctcggatgccgccgcggtcgag
gctgcggagctgaagcggcaggcggaggagggactcgccaaccgcctgcgcgtgcacggc
ctgtcgcagggcaccacggaagaggattacaacaagcgcctggcgttcgagctcgacgtc
atcatgcgcatgaagtacgcgggctacttcctgatcgtgtccgacttcatcaaatgggcg
aaggcgcacggcatcccggtcgggccgggccgcggctcgggcgcaggctcgctggtcgcc
tgggcgctgaccatcaccgatctcgacccgatcaagttcggcctgctgttcgagcgcttc
ctcaatcccgagcgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgc
ggcgaggtgatcaaatacgtccaggagcgctatggccgcgaccaggtcgcgcagatcatc
accttcggaacgctgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtgctgcagatg
ccctatggccaggtcgacaagctgaccaagctggtgccgcagaacccggccgcgccggtg
acgctggccgccgcgatcgagagcgagccgaagctgcaggcgttccgcgacgaagatccg
gtggtggcgcgcgccttcgacatcgcccagcgcctcgaaggcctgacccgccacgcctcg
acgcacgcggccggcatcgtcatcggcgatcgccccttgagcgaactcgtgccaatgtac
cgcgatccgaagtcggacatgccggtgacccagttcaacatgaaatgggtcgagccggct
ggcctcgtcaaattcgacttcctcggcctgaagacgctgacggtgctcgacgttgcctgc
aagttgctcaagccgcgcgacatccatgtcgatctcgccacgctgccgatcgacgatgcc
gagagctaccagatgctggcgcggggcgaggtggtcggcgtgttccaggtggaaagccag
ggcatgcggcgcgcgctggtcgacatgcgccctgaccgtttcgaggatatcatcgcgctg
gtcgcgctctatcgcccgggcccgatggcgaacatcccgacctattgcgcgcgcaagcac
ggcgacgaggagccggaatatctgcatccggtgctggagccgatcctcaaggagaccttc
ggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgatgtcgggctattcg
cttggcgacgccgacctcttgcgccgcgccatgggcaagaagatccgtgccgagatggac
aagcagcgcgacatcttcgtcgcgggcgcggtgaagaacggcgtgccgaagggccaggcc
gagactatcttcgagctgttggccaagttcgccgattacggcttcaacaagagccacgcg
gcggcctatgcgctggtgtcctaccacaccgcctacatgaaggcgcattatccggtggag
ttcatcgcggcgtcgatgacactcgatctcaacaataccgacaagctgtccgaattccgc
tccgaggcgcagcgcctcggcatcaaggtcgagccgccgaacatcaatcgctcgggcgcg
accttcgaggtcggcgacaagacgatctattacgcgctcgccgcgctcaagggcgtcggc
atccaggcgatcgaccagatcatcgaggagcgcaacaacaggggattgttcacctcgctc
gccgacttcgccgcgcgggtcaatccgcgcgcgatcaacaaacgcatcatcgagagcttt
gccgccgccggcgccttcgacacgctggagccgaaccgggcgcgtgtcttcgccggcgcg
gattctatcctggccgcctgccagcgcgcgcatcaggccgagaccatcggtcagaacgac
atgttcggctcatcggccgacgcgccgagcatcatgctgccgcagatcgagccatggctg
ccggccgagcggctgcgccgcgaatacgatgcgatcggcttcttcctgtcgggacatccg
ctcgacgattacgccaccgtgctcaagcgcctgcgggtgcagtcatgggccgagttctcg
cgcgcggtgaagaccggcgccaccgccggcaaggtcgcggccaccgtcgtctcgcgcatg
gagcggcgcaccaagaccggcaacaagatgggcatcatggggctgtccgatccgacgggc
cacttcgaggccgtgctgttctccgagggccttgcgcaatatcgcgacgtgctggagccg
ggggctgccgtgctgctccagctcggcgccgagctccagggcgaggacgtgcgcgcccgc
gtgctgcatgccgagccgctcgatgacgccgccgccaagacgcagaagggcctccgcatc
ttccttcgcgacaccaagccgctggaatcgatcgccaagcgtctcgccggtcccgagatc
gccgccgcgaacggtgccgcgccgaaaatcggcagcccggccatcgcgccgcgctccaat
ggcgacggcgaggtctcactggtgatgatgctcgacctcgagaccgaggtggagatgaag
ctgcccggccgcttcaaggtctcgccgcagatcgccggcgcaatcaaggcggtcgccggc
gtggtggacgtgcagcaggtctga
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