Bradyrhizobium daqingense: LPJ38_29855
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Entry
LPJ38_29855 CDS
T07756
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPJ38_29855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdg03019
]
LPJ38_29855
03009 Ribosome biogenesis [BR:
bdg03009
]
LPJ38_29855
Enzymes [BR:
bdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPJ38_29855
Messenger RNA biogenesis [BR:
bdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPJ38_29855
Ribosome biogenesis [BR:
bdg03009
]
Prokaryotic type
rRNA helicases
LPJ38_29855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UFS87803
LinkDB
All DBs
Position
complement(6238452..6240401)
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AA seq
649 aa
AA seq
DB search
MSLPALTPPLARALAERNYDSLTPVQLAVLAHEATSRDLLVSAQTGSGKTVAYGLAIARN
LLDDAERFGQAAAPLALIVAPTRELALQVQRELAWLYGHAGGRVVSCVGGMDPRREQREL
AAGAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRR
TLLFSATFPRGIVALARQYQRDAFRIEVAGDEGGHADIEYRAIRIAPGDIEHAVVNMLRF
YEAPSALVFCSTRDAVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRSRVCVAT
DVAARGIDLPSLDLVIHADLPNDAEVMQHRSGRTGRAGRKGTSVLLVPPARRRRAELLLN
VSGIDADWGTAPQADEIRKLDHARMKDVLFTEETTPDDLVLAQALLAERSAEDIAAALAR
LYRARLPSPEDILDPGERSGKPREDRGRDKFQGADDEDRPGKSRSKPGKGSSKHNMAEGS
VWFRAAIGRRKNAEARWLLPMICRRGGIDKRDIGAIKIMDTTTEFEISERVAESFAAKIK
RPDKEDSIRIEPMAEAPQRQAPSEERSYTPRRESADADRRPRREDRARDTKAFKPRDKAH
GERGPRVDEAPSFGRKNKQRNKPAHAEPSVTPWPVKGAGGKKAKKKRRG
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcttccggccctgaccccgccgctcgcccgcgctttggctgagcggaactatgat
tcactgacccccgtccagctcgcggtgctcgcccacgaagccaccagccgcgacctcctg
gtctcggcccagaccggctctggcaagaccgtcgcctatgggctcgcgatcgccaggaat
ctgctcgatgacgccgagcggttcgggcaggcggccgcgccgcttgccctgatcgtggcg
ccgacccgcgagctcgcgcttcaggtgcagcgcgagcttgcctggctctatgggcatgcg
ggcggccgcgtcgtctcctgtgtcggcggcatggatccgcgccgcgagcagcgcgagctc
gccgccggtgcgcacatcgtcgtcggcacgcccgggcggctctgcgatcatttgcgccgc
ggccggctcgacatctcggaattgaaggcggtcgttctcgacgaggccgacgagatgctc
aatctcggtttccgcgaggacatggagttcattctcgagaccacgccggagacgcgccgc
accctgctgttctcggcgacgttcccgcgcggcatcgtcgcgctggcaaggcaatatcaa
cgcgacgcgttccggatcgaggtcgccggcgacgaaggcgggcacgccgacatcgagtat
cgcgcgatccggatcgcacctggcgatatcgagcacgccgtcgtcaacatgctccgcttc
tatgaggcgccgagcgcgctggtgttctgcagcacgcgcgatgccgtcaggcatctgcag
gcggcgctgctcgagcgcggcttttccgtggtcgcgctgtcgggcgagctgacgcagaac
gagcgcaccatggcgctgcagtcgctccgcgacggacgttcccgtgtttgcgttgcgacc
gacgttgccgcccgcggcatcgatctgccgagcctcgacctcgtcatccatgccgatctg
cccaatgacgccgaggtgatgcagcatcgctccggccgtaccgggcgcgcgggccgcaag
ggcaccagcgttcttctcgtgccgccggcacggcggcggcgcgccgagctgctgctcaat
gtttccggcatcgatgcggactggggcaccgcgccgcaggccgacgaaatccgcaagctc
gaccacgcccgcatgaaggacgtgttgttcacggaggagacgacgccggacgatctggtg
ctggcgcaggcgctgttggccgagcggtcggcggaggacatcgccgccgcgctggcgcgg
ctttatcgggcacggctgccgtcccccgaagacatcctcgatcccggcgaacgcagcggc
aagccgcgggaggatcgcggtcgcgacaaatttcaaggtgcggatgacgaggatcgtcct
ggcaagtcgcgatcgaagcccggcaagggatcgtcgaagcacaatatggcagagggcagc
gtctggttccgcgccgcgatcggtcggcgcaagaatgcggaggcgcgctggctgctgccg
atgatctgccgccgcggcggcatcgacaagcgcgacatcggcgccatcaagatcatggac
accaccaccgagttcgagatttccgagcgcgtggcggagtccttcgccgccaagatcaag
cgtccggacaaggaagacagcatccgcatcgagccgatggcggaggcgccgcagcggcag
gcgccgtcggaggagaggtcatatacgccccggcgcgagagcgccgatgccgatcgccgc
ccgcgtcgtgaagatcgcgcacgcgacacaaaagcattcaagccgcgcgacaaggctcac
ggcgagcgcggtccgagagtcgacgaggctccttccttcggaaggaagaacaagcagcga
aacaagccggcccacgcggagccttcagtcacgccatggcccgtcaagggtgcgggaggc
aagaaggcgaagaagaagcgtcgcgggtga
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