KEGG   Phocaeicola dorei HS1_L_3_B_079: GV66_02105
Entry
GV66_02105        CDS       T03263                                 
Name
(GenBank) RNA polymerase
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
bdh  Phocaeicola dorei HS1_L_3_B_079
Pathway
bdh02020  Two-component system
Brite
KEGG Orthology (KO) [BR:bdh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    GV66_02105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdh03021]
    GV66_02105
Transcription machinery [BR:bdh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GV66_02105
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE Sigma70_ECF HTH_24 HTH_10 HTH_40 UPF0122 HTH_11 HTH_38 HTH_23 HTH_16 HTH_20 PF0610-like_N HTH_17 DUF3514 DUF6362 HTH_Mga Cytochrom_B562 MarR_2 Dimerisation2-like_dom HTH_Tnp_ISL3 LexA_DNA_bind HTH_AsnC-type HTH_29 DUF848
Other DBs
NCBI-ProteinID: AII66581
LinkDB
Position
complement(602470..603072)
AA seq 200 aa
MKLPLDIERELIRKLINGDKIAFSHLFSFYKSQVLYYCVHFVKDKEIAEDITQDIFLTVW
EKKEDIRIEQSFSAFLYTIARNRIYDIFRSLSARSVLYEKLMEQAIDYVDDVEKSLEEKN
IQELIAQALEQLSPRQREIFELSRNRGLSHKEIAEQLGLSVYTVQDHIKNALEKIRAYLI
PFISACPILVSLIILKYVKP
NT seq 603 nt   +upstreamnt  +downstreamnt
atgaagctgcctcttgacatagagcgggaattaattcggaaacttataaatggagacaag
attgctttcagccatcttttctctttttataagtcccaggtcctttattattgtgtccat
tttgtcaaggataaagagatagctgaggatataacacaagatatttttttgaccgtttgg
gaaaagaaggaagatattcggattgagcagtctttttccgcttttctttatactatagca
agaaatcgtatttacgatatatttcgttctctgtctgcccgatctgtgctatacgaaaaa
ctgatggaacaggccattgattatgtagatgatgtagagaagagtctggaagaaaagaat
attcaggaattgattgcacaggctttggaacagctgagtccgcgccaacgggagattttc
gaattgagccggaatagaggactgtctcataaagaaatagctgaacaacttggcttgtct
gtttataccgtgcaagatcatataaaaaatgcattagagaaaattcgtgcttatctgatc
cctttcataagtgcctgtccaatacttgtaagcctaatcatattaaaatacgttaaacca
taa

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