Phocaeicola dorei HS1_L_3_B_079: GV66_02235
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Entry
GV66_02235 CDS
T03263
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdh
Phocaeicola dorei HS1_L_3_B_079
Pathway
bdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GV66_02235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdh03019
]
GV66_02235
Enzymes [BR:
bdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GV66_02235
Messenger RNA biogenesis [BR:
bdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GV66_02235
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Utp25_C
CMS1
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
AII66606
UniProt:
A0A4R4HVZ6
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All DBs
Position
complement(641997..643301)
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AA seq
434 aa
AA seq
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MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI
QRLYQSDHKKGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKR
GVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTL
FFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPE
IESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDI
AARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQKLI
GLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKSNGDYWRRKKQVQSRQGQ
GRQSSDRKASGRQG
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattagatcttatagagcctattttgaaggctttacaacaaaccggc
tatacaacgccgacccccattcaggaacaagcaattcctgtattattaaaaggtaaagat
ttgctgggatgcgcccagacaggaacaggaaaaacagcagcgtttgctatccccctcata
caacggctttatcaatcagaccataaaaaaggtatcaaagcattgatactcaccccgacg
cgtgagcttgctatacagataggcgagaactttgatcaatatgctaaatataccggagtg
aaacatgccgttattttcggcggagtgccccaaaaggcgcaagttgatgctttgaaacga
ggcgtgcaggtattgattgccactcccggacgtttgcttgacttgcagtcgcaaggttgt
atttcattgaagggattggagtattttgtattggatgaggcagaccgtatgctcgatatg
ggcttcatacacgatatcaaaaaagtattgaaactgattcctgcccggcgacagactttg
tttttctcggctaccatgccttctgaaatagagaagctggcagattccatgctgactaat
ccgaagaaggtagaggtgactcctgtttcgtctactgttgatactatccagcaaagtgtt
tatttcgtagagaagaaagagaagaaggacttgctgctgcatttgttgaagaatccggag
atagaatctgtattgattttcacccgtaccaagcatggggcggataaattggcgaagata
ttgaataagagtgagatcggggcggaagctattcatggaaacaaatcgcagaacgcacgc
caaagggcgttgacgaacttcaaggatcacaccacaagagtgttgatagccacagatatt
gcagccagaggtattgatgtgaaccagctttctcacgttatcaactatgagttgcccaat
atatcggaaacttatgtgcaccgcatcggtcgtaccgggcgtgccggacacgacggaata
gccatctctttttgtgaatcggaagaattaccttatttaaaagatatccaaaaactgata
ggactacagattccggttgtgaaagaccatccttgggtgactgtggaaggagtgaaagca
caggctggtaagacggaagaactgaaggaaaaagcaaaagccaataaggcataccggggc
agtaagagcaatggtgattattggcgtaggaagaaacaggttcaaagcaggcaagggcaa
ggcaggcagagttcggatagaaaggcttccggcaggcaaggataa
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