Phocaeicola dorei HS1_L_3_B_079: GV66_14095
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Entry
GV66_14095 CDS
T03263
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bdh
Phocaeicola dorei HS1_L_3_B_079
Pathway
bdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GV66_14095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdh03019
]
GV66_14095
03400 DNA repair and recombination proteins [BR:
bdh03400
]
GV66_14095
Enzymes [BR:
bdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GV66_14095
Messenger RNA biogenesis [BR:
bdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GV66_14095
DNA repair and recombination proteins [BR:
bdh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GV66_14095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Helicase_RecD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AII68763
UniProt:
A0A4Q5HZB0
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All DBs
Position
3476876..3479311
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AA seq
811 aa
AA seq
DB search
MIESQIAARVLPSKCREAVKVLLQEVYGYEDFRNLEVYDDLFKGKEKLQLSQGQLIEEVI
MEAEKGIKGDSSVHNLLLTAPTGAGKSLLFQLPAIYLGNEYKLLTLVVSPLKALIVDQVE
ALQELGYERVAYASSDLSPEQKNEVYRRVRDGEVDLFYLSPELLLAYDISYFVGERRIGL
VVVDEAHTVTTWGKEFRVDYWFLGRHLEALKNALGYVFPVFALTATAVWNPKGGNDMIFD
TIRSLHLAPCALYVGTVKRENIGFDITAMTIEEGETYDKAKQRTVAARVEDFLDGHKTII
YYPFAGGIDMKLKTWVYPANWHWVASYYGKKDKEQKAEIIQAFKEGEKKIIVATKAFGMG
VDISDIDRVYHVAPSGTFVDYIQEIGRAARDKNISGVAATDFNERDFYYMKRLHSAGAIS
QEQLGMILKKVWEIYLMKGCSDEMQMSLSDFEFAVRLPRKKNKLEYESDLEQVIKTALLW
IEEDLSFRHGGSPVEINSQTLFADGYVQEKTGDAAFRKKYKQYMVPVEGVEGVYKVAFES
LWENCFSEMGYREFKRDLYNGNLFEGVRAAAVGKHDVLLKESAADICSKLASLLKSLKDL
LTVSLYGNKGKFEEDDLRSIFAAYDMDVPSAKRFITSLLESRVEEGRSVSYITSAKKKDE
DKLMFTVTRGFDLLLSRYQKLCAQRITGKKGDRLLFYVTPFSDLNMLLNLLSMLNVVDFT
VEGGVPSVGVRVRDAEILKKEAASEGYQNRVLENNEKIFQEQIELFRLFFGNTKLSDEQR
WEFIEDYFTGMNLEGLKEKYSCVVECRLCKV
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgatagagtcacagattgcggcaagagtattgccgtctaaatgccgtgaagcggtaaag
gttcttttgcaggaagtgtacggatatgaagatttccgtaatttagaagtttatgatgac
ttgttcaaaggtaaggaaaaattgcaattgtctcaagggcaattaattgaggaagtcatc
atggaagctgaaaaagggatcaagggtgattcgtctgttcataatttgctcctgactgct
ccgaccggagctggaaaatcattgttgtttcagctccctgccatttatctgggtaatgaa
tataagcttcttactcttgtggtttctccgctgaaagcattgatagtggaccaggttgag
gcgttgcaggagttaggatatgaacgtgtggcgtatgcttcgtccgatctttcacctgaa
caaaagaacgaagtatatcgtcgtgtccgtgacggggaggttgatcttttttatctttcc
cctgaattattgttggcgtatgatattagttatttcgtaggtgaacgccgcattggattg
gtagtagttgacgaggctcataccgtgactacttggggtaaagagttccgggtggattat
tggtttctagggcgtcatctggaagctttaaagaatgcgttgggatatgtattccctgtt
tttgcattgacagccactgctgtgtggaatcccaaaggtgggaacgatatgatttttgat
accatccggtcgttgcatcttgctccgtgtgccttgtacgtgggcacggtgaagcgtgaa
aatattggctttgacattaccgccatgaccatagaggagggagagacctacgataaggcc
aagcaacgtactgttgccgcccgggtggaggattttctggacgggcataagactattatt
tattatccttttgccggaggtatagatatgaaactgaagacttgggtgtatccggctaac
tggcattgggtggcatcttattatggtaaaaaggataaagagcaaaaagccgaaattata
caagcttttaaggagggtgagaaaaaaataatcgttgctacgaaagcttttggcatgggg
gtggatatcagcgatattgaccgtgtgtatcatgtggctccatccggtacctttgtcgat
tatattcaggagattggccgtgcagcccgtgataagaacatttctggtgtggcagcgacg
gactttaatgaacgcgacttttattatatgaaacgcctgcattctgcaggtgccatctcc
caggaacagttggggatgattctgaagaaagtatgggaaatatatctgatgaaaggctgt
agtgatgaaatgcagatgtctttatccgattttgaatttgcagtgaggctgcctcgtaaa
aagaacaagctggaatatgaatcggatttggagcaagtcatcaagacggctttgttatgg
atagaagaggatctgagtttccggcatggcggttctcctgttgaaatcaattcacagact
ctgtttgccgatggctatgtacaggaaaagacgggtgatgccgctttccgtaaaaaatac
aagcagtatatggttcccgtggaaggggttgaaggagtctacaaggtggcttttgaatct
ttgtgggaaaattgtttctcggagatggggtatcgtgagtttaagcgcgatttatacaat
ggaaatctctttgagggagttcgtgcggcagctgtgggtaagcatgatgtcttgttaaaa
gagagtgcagcggatatctgctccaagctggcaagtctcttgaagagtttgaaagatttg
ttgacggtgagtctgtatggtaataaaggaaagttcgaggaggacgatttgcgtagtatt
tttgcggcgtatgatatggatgttccttctgccaagcgttttatcacttcgttactggag
tccagggtagaggagggcagaagtgtgagttacatcaccagtgccaagaagaaagatgaa
gacaaactgatgtttaccgttacccgtggttttgatttgttattgtcccgttaccagaag
ttgtgtgcccagcgtattacaggaaagaaaggagaccggctgttgttctatgtcactccg
ttctccgatctcaatatgttgctcaacttgctgtctatgctcaatgtggtggactttacc
gtagaggggggtgttccttctgttggagtgcgtgttcgtgatgcggagatattgaaaaag
gaagctgcctcggagggctatcagaaccgtgtgctggagaataatgagaaaatattccag
gaacagatagagttgttccggctgttctttggcaatacgaagttaagtgacgagcagcga
tgggagtttatagaggattattttacggggatgaatttggagggattgaaagaaaaatat
tcttgtgttgtggaatgccggctgtgtaaggtctga
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