Phocaeicola dorei HS1_L_3_B_079: GV66_17105
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Entry
GV66_17105 CDS
T03263
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdh
Phocaeicola dorei HS1_L_3_B_079
Pathway
bdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GV66_17105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdh03019
]
GV66_17105
Enzymes [BR:
bdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GV66_17105
Messenger RNA biogenesis [BR:
bdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GV66_17105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
Cas3-like_C_2
SMC_N
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AII69302
UniProt:
A0A076IQI7
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All DBs
Position
complement(4150652..4151923)
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AA seq
423 aa
AA seq
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MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL
NQLSKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQEKK
GLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYLPKE
RQTIMFSATMPAKIQQLAKTILNNPVEIKLAVSKPAEKIIQTAYICYERQKLGIIQSLFQ
DQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRINILIA
TDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQFKAIE
NFLGRNIYKIPVPEELGEAPEYNPRSGAGRSNHKGGSSRKQGNYKGKKNGTPGANNRRNT
PKE
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagaactaaatttagaagaaggggtgcttcaggcattagatgccatgaga
tttgaagaatgcactcctgtacaagaacataccataccggtcattcttgaaggaaaagat
ttgatcggagtggcacagaccggaaccggcaagactgccgcataccttttgcccgttctt
aatcaattaagcaaaggcggatatccggaagatgccatcaattgtgtgatcatgtcaccc
acacgcgaattagcgcaacagatagaccagcaaatggaaggtttctcttattttctaccg
gcatccagcgtagctgtttacggaggaaacgatggtgtgcgcttcgagcaagaaaagaaa
ggtttaactttgggggccgatgtagtcattgctactccgggacgtctgataagtcatctc
agcctaggttacgtagacttgtctaaagtttctttctttattcttgatgaagcggaccgt
atgctggatatgggattctcggatgacattatgcaaatagtgaaatatctgccgaaagaa
cgtcagaccatcatgttctcggccactatgccggctaaaatacaacaattggcaaaaacg
atcttaaacaatccggtagaaataaaattagcggtctcaaaacctgcggaaaagattatc
caaacggcttatatctgttatgaacgccagaaattgggaattattcaatccctgttccag
gatcaaacacctgaacgggtcattatctttgcctcttccaaattgaaagtaaaggaggtg
acacaagcattcaagcggatgaaactgaacgtaggtgaaatgcattcagacttggagcag
tcccagcgggaacagattatgcgtgaattcaaaagtggcagaatcaatatcctgattgct
accgatattgtttcgcgaggaatagacattgacgatattcgtttggtaatcaactacgat
gtaccacatgacagcgaggattatgtacaccgcatcggccgtacagctcgtgccaaccat
gatggttgcgccattacttttgtcagtgagaaagagcagacccaattcaaagctattgaa
aatttcttgggtaggaatatctataaaatcccggttcccgaggaattgggagaagcgccc
gaatacaacccgcgaagtggcgccggtcgtagcaatcacaaaggtggcagttccagaaaa
caaggcaattataaggggaaaaagaacggtacgcccggtgccaataatagaagaaacacc
ccaaaagaatag
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