Brachypodium distachyon (stiff brome): 100820915
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Entry
100820915 CDS
T01717
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100820915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100820915
Enzymes [BR:
bdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100820915
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100820915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
ATP_bind_1
CbiA
ABC_tran
SRPRB
Rv0428c_C
AAA_29
MMR_HSR1
AAA_24
GTP_EFTU
KAP_NTPase
FtsK_SpoIIIE
T2SSE
Motif
Other DBs
NCBI-GeneID:
100820915
NCBI-ProteinID:
XP_003571680
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All DBs
Position
3:6295297..6299968
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AA seq
440 aa
AA seq
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MAAAGATGAAAAAPQPPRMFKLDPQSELRVEVPPDAPLRVRLVAGTAEIFGTELPPEGWV
PVPPRSKIAIFTWHGATVELDGVSESEYTSDETPMVIYVNTHAILDARRARARAAAAQGG
DLEASQGPRVIVVGPTDSGKSTLCKMLLSWAAKQGWKPTYVDLDIGQGSITIPGCISATP
IEKPIDIVDGIPLEMPIAYFYGHPNPSINPDVYKALMKELAQTLETQFSGNAESRAAGMV
INTMGWVEGLGYELLLNAIETFKANVVLVLGQEKLWKMLKDAVQSKPNIDVVKLHKSEGV
VLRNSKYRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVYKIGSGHQAPRSALPIGAE
PVADPTRLVAVNISTDMVHTVLAVSYAKEPDEISSSNVAGFIHVTDVDIQRKKLTYIAPC
PGDLPSRLLIASSLTWYEAL
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccggcgctaccggggccgcggccgcggccccgcagccgccgcggatgttc
aagctggatccgcagagcgagctccgcgtggaggtgccccccgacgcgcccctccgcgtg
cgcctcgtcgccggcacggcggagatcttcggcaccgagcttccccccgagggttgggtc
cccgtcccgccccgctccaagatcgccattttcacgtggcacggcgcgacggtggagctc
gacggggtcagcgagagcgagtacacgtccgacgagacgccgatggtgatttacgtgaac
acgcatgcgatccttgatgcaaggagggctagggcgagggctgccgcggcgcagggaggc
gatttggaggcctcacagggacccagagtgattgttgtggggccgaccgattctggaaag
agcactttgtgcaaaatgctcctcagctgggctgctaaacagggatggaagccaacatat
gtggatttagatattggccagggatcaataaccatacctggatgtatttctgctacaccg
attgagaagcctatagatatagttgatgggattcccttggagatgccgattgcatatttt
tatggccatccaaatccaagtattaatccagatgtttacaaagctcttatgaaggagcta
gctcaaacattggagacacagttctctggaaatgctgaatctagggcagcgggcatggtt
ataaacactatggggtgggttgaaggccttggctatgagttacttctcaatgcaattgaa
accttcaaggctaatgtagtgctggtgttgggacaggagaaactctggaagatgttaaaa
gatgcagtacaaagtaagcccaacattgatgttgtaaagcttcataaatcagagggtgtt
gtcctaaggaattcaaaatatcgtcaaaaaactagaagcttcagaatcaaggagtacttt
tatgggattgcaaatgatcttgcaccacattcaaatgttgtcaacttcagtgatgtttct
gtttacaaaattggtagtggacatcaagctcctcggtcagcattaccaattggtgcagag
cctgtggcagaccctactcggcttgttgctgttaacatcagcacagatatggtccacaca
gtgctcgctgtttcttatgcgaaggaacctgatgaaataagttcaagcaacgtcgccggt
ttcattcatgtcacagatgttgacattcaaaggaagaagctgacgtacattgcaccttgc
ccaggagacttgccaagcaggctgttaatcgcgagctccttaacatggtacgaggcattg
tag
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