Brachypodium distachyon (stiff brome): 100821046
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Entry
100821046 CDS
T01717
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100821046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100821046
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100821046
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Step II factors
100821046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ResIII
FtsK_SpoIIIE
DUF4606
AAA_30
SLFN-g3_helicase
NB-ARC
T2SSE
AAA_16
DAP3
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
100821046
NCBI-ProteinID:
XP_010237672
UniProt:
I1IL91
LinkDB
All DBs
Position
4:17604734..17613776
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AA seq
697 aa
AA seq
DB search
MPSFSSGASPQKQQHNARRKQLIRQQRKSLPIASVKKRLVEEVKKNDTLIVVGETGSGKT
TQLPQFLYDAGFCQDGKVIGITQPRRVAAVTVAKRVAEECNDQLGKKVGYSIRFDDSTSN
ATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQRSRSICADK
NGKTSSDRQDHSQSSTLKACQGIKYAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYP
VDTLYTYQPESDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERLIQERARQLPPD
STKIWTTPIYSSLPSEQQMNAFKPAQAGARKVVLATNIAETSVTIPGIKYVIDPGMVKAR
AYNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQECEFDKLAESTVPEIKRCN
LSNVVLQLKALGIDDIIGFDFMEKPSRTSILKSLEQLILLGALTDDYKLSDPVGKQMARL
PLDPMYSKALIVSNEFKCLEEMLIVVSMLSVESIFFTPREKLEEARAARKSFESSEGDHI
TLVNVYRAALECLEKSKSANAKEKTMEKALNRWCWENFINYRSLRHARDVHSQIQGHVQQ
MGLYVSSCGDDMVQFRRCLTAAFFLNAAMRQPDGSFRALATGQSVQMHPSSVLFRTKPDC
VIFNELVRTTQNYVKNLSRIDPLWLAELAPQYYATED
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccttctcttcgggcgcttctccgcagaagcagcagcataacgcgcggaggaag
cagctgattcgtcagcagaggaaatcgcttcccatcgcgtcagtgaagaaaaggcttgtc
gaggaggtcaagaagaatgacactctgatcgtcgtcggtgagaccgggagtggcaaaacg
actcagttgccacaatttttgtatgatgctgggttttgtcaggatggaaaagtcattggg
atcactcagcctcgaagagttgcagccgttacagtagcaaaacgtgttgctgaggaatgc
aatgatcaattgggcaaaaaagtcggatactctattcgatttgatgattccacatctaat
gcaacaaggattaagtacatgaccgacggtttgcttctaagggaagcacttcttgatcct
ttattgtctaagtatagtgttatagttgttgacgaagcccacgaaagaacagtccataca
gatgtcttgctgggtttgttgaaaaaagtccaacgttccagatctatctgtgccgataaa
aacggaaagacttcgtctgacagacaagatcactctcaaagttctactctaaaggcatgc
cagggaataaaatatgcacctctaaagcttataattatgtctgccagtttggacgccaag
tgtttttctgactattttggtggcgctaaagctgtacatatccaaggacggcaataccct
gttgatacactgtatacttatcagcccgagtcggattatctagatgctacactagttaca
atatttcagatccatttggaggaaggacctggagacattcttgcatttttaactggccaa
gaggagattgaatcactagagagacttattcaggagcgtgctcgtcaacttccacctgat
agtaccaagatatggactacacctatctactcatctcttccatcagagcagcaaatgaat
gcttttaaaccagcacaagctggagcccgcaaggtagttctagcaacaaatattgcagag
acttctgtaacaatacctggtattaaatatgttattgatcctgggatggtcaaagcacgc
gcctacaatcctgttactggaatggagtcccttatcatcatcccagtctctaaagcacag
gctcttcaaaggagtggccgtgctggacgggaggggccagggaagtgcttccgattattc
caagaatgtgagtttgataaactggcggaatctacagttcctgagattaagcgatgtaac
ctctcgaatgttgtactacagctcaaagctcttggaattgatgacatcataggttttgat
ttcatggagaaaccatccaggacatccattttgaaatcattggagcagttgattttacta
ggagctttgactgatgattataagctctcagatccagttggtaaacagatggctaggctg
cctttggatccaatgtactccaaggcattgatagtatcaaacgaattcaagtgcttggaa
gaaatgttgatagttgtttctatgctttcagtggaatcaattttcttcaccccacgcgag
aagttagaagaggcaagagctgctaggaagagttttgaaagctctgaaggagaccatata
actttggtgaatgtatatcgagctgctttggaatgcttggaaaagagcaaaagtgcaaat
gccaaagaaaagacaatggagaaggctctgaacagatggtgctgggaaaacttcatcaat
taccgctctttaagacatgctcgtgatgttcacagtcaaattcagggccacgtccaacag
atggggctttacgtgtcatcttgtggagatgacatggttcagtttcggagatgcctcact
gctgctttcttcttgaatgcagcaatgcgacagccagacggatcattcagggctcttgca
accggtcagagcgtgcagatgcatccttcgtcggtgctcttccggaccaagccggactgc
gtcatcttcaacgagctggtccggacaacccagaactacgtcaagaacctgagccggatt
gatcccctgtggcttgctgaactcgccccgcagtactacgccactgaggactga
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