Brachypodium distachyon (stiff brome): 100821106
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Entry
100821106 CDS
T01717
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF2
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bdi04131
]
100821106
04121 Ubiquitin system [BR:
bdi04121
]
100821106
Enzymes [BR:
bdi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100821106
Membrane trafficking [BR:
bdi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
100821106
Ubiquitin system [BR:
bdi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100821106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf_RING_Vps8
zf-RING_Vps41
zf-Nse
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
100821106
NCBI-ProteinID:
XP_003569088
UniProt:
I1HCA8
LinkDB
All DBs
Position
2:2839483..2841417
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AA seq
415 aa
AA seq
DB search
MDPSSPAPPAAVAAAARAPSYWCYSCERFVRATASGGGDAEAGVVCPGCDGGFLEEMDAP
PPRSRPAAFVRRRAAADPALRGGATELRPRRNHRRGSGASGDRSSPYNPVIVLRRSAATD
PGDADDEEAAAAAGAVTSSSFELFYDDGAGSGLRPLPESMSDFLMGSGFERLLDQLAQIE
AGGFGAARPCDNPPASKAAVESMPVVVVAACHVGADSHCAVCKEPFELGAEAREMPCGHM
YHQDCILPWLALRNSCPVCRHELPTDVPRPPASDPAAAEDQGSNTGAEAGSEEETVGLTI
WRLPGGGFAVGRFAGGRRAGERELPVVYTEVDGGFNNGPAPRRISWSSRGSRSSQRGTIR
RIFHNMFACFGHAHSTTNARASSSRSEWSSVFTRGLRSRSTSWRSQDGHADAIAR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggatccctcctcgcctgccccgccggcggcggtggcggcggctgcgagggcgccgtcc
tactggtgctacagctgcgagcgcttcgtgcgcgccactgctagcggtggcggggatgcc
gaggccggggtggtgtgccccggctgcgacggggggttcctcgaggagatggacgcgccg
ccgcctcgcagcaggccggccgccttcgtccgccgccgtgccgcggcggaccccgcgctc
cgcggcggggccaccgagctccggccccgccgcaaccaccgccgcggctctggcgcatcc
ggggaccgctcgtccccgtacaaccccgtcatcgtgctccgccgctcggccgccacggac
ccgggcgacgccgacgacgaggaggccgcggcggcggcgggcgccgtgaccagcagcagc
ttcgagctcttctacgacgacggcgccggatccgggctccgcccgctgccggagagcatg
tccgacttcctcatggggtccggcttcgagcggctcctcgaccagctcgcccagatcgag
gccggcggcttcggcgccgcgcgcccctgcgacaacccgccggcgtccaaggccgccgtc
gagtccatgcccgtcgtcgtcgtcgccgcctgccacgtcggcgccgactcccactgcgcc
gtctgcaaggagcccttcgagcttggcgccgaggccagggagatgccgtgcggccacatg
taccaccaggactgcatcttgccgtggctcgcgctgcgtaactcgtgccccgtgtgccgc
catgagctgcccaccgatgtgccgcggcctccggcgagtgacccggctgccgcggaggac
cagggcagcaacactggggctgaggctggcagcgaggaggagaccgtggggttgacgatt
tggcggctccctggtggaggatttgctgttgggaggtttgctggtggcaggagggctggt
gagagggagctgccagttgtctacactgaggtggatggcggcttcaacaatggcccggca
ccgaggaggatttcatggtcatcgagagggagccgatcgtctcagaggggcactattaga
cgcatttttcacaacatgtttgcgtgctttgggcatgcccattcgacgaccaatgctcga
gcatcatcctcgaggtcagagtggagctcggttttcacccgcggtttgaggagccggagc
acaagctggagatcgcaagatgggcatgctgatgcaatcgcaaggtga
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