Brachypodium distachyon (stiff brome): 100821137
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Entry
100821137 CDS
T01717
Name
(RefSeq) uncharacterized protein LOC100821137 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100821137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100821137
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100821137
mRNA degradation factors
5'-3' decay
Decapping complex
100821137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
Ge1_WD40
Clathrin_H_link
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_EDC4L
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_SCAP
ABC1
Kdo
Motif
Other DBs
NCBI-GeneID:
100821137
NCBI-ProteinID:
XP_014757860
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All DBs
Position
4:30906041..30917008
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AA seq
912 aa
AA seq
DB search
MPPPLPVMPSAPPVGMLSSSSSKVPRGWLLGGGDKVVHNVDSRLPGEAQPPQLEATPITK
YTSDPGLVLGRQITVNRKYILYALKLGNIRVLNINTALRSLLRGHTQRVTDMAFFSEDVH
RLASASVDGRIYVWNIDEGPDEESRPQITGKIEIAIQIVGHAESYHPRICWHSHKQELLY
VGIKNCVLRIDTTKVGRGRDFSVEEPIKCHLDEMIDGVCLVGKHDGDVTDLSISHWMTTR
LASGSKDGMVKIWDDRKSVPLSVLKPHDGQAVYSVAFLTAPDRPNHINLITSGPLSQEIK
IWASTNEEGWLLPSDSESWNCTQTLELVSSLESRVEEAFFNQVAVLPQASIILLANAKKN
AIYAVHVEYDLDPASTHLDYIADFTVGMPILSLIGIHESQPDGEQVVQLYCIQTMAIQLY
GLELSLCSPPSDITGLGSYPTEVADMQGMLQQAVQRFQELFSQTKFKEAVELAVEFPQGL
LRTPETVAKLKSAPLQLGQVSPLLHYFATLLTQGKLNAYESLELSRLAINQNGKSLLEGW
LADDKLECSVELGNLVKTVDDDLALKIYIRATTSSSALKGPGEINYKDYDGEGSSIFPSN
ITPGPSSEMPDLASEIEALEHIFSDASVQPTKLSYALIKSVTNNFSKVIGRGGFAVVYQG
VLRNGKIALKKLSLSNGFSDELFVDEIECLTKAKHNNVVRYLGYCADTQGELMEFNGRCV
IAEVPKRLLCFEFVPNGSLHRYLKGKLCGDEWQVRYKMIKGICQGLQYLHKIRINHLDLK
PGNILLDVGMEPKIADFGLSRCFDEEQSRVFTKHIYGTRGYIAPEIINNGEISFKSDIFA
LGIIIIKLLTGHNDYDIENWHKSLNADCPQVRRCIEIAQACVDDDQHKRFAIDEIIHKLD
ELETIVDSPAIS
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgccactcccggtgatgccatccgcgccgccggtggggatgttgagcagtagc
agcagcaaggttccgagggggtggcttctgggtggtggtgacaaagtggtacacaacgtt
gactccaggctgcctggagaggctcagccaccacagctggaggcgacgccgatcaccaag
tacacgtcggaccctggcctcgtgttgggtaggcagatcactgtaaaccggaagtacatc
ctgtatgcgctcaagctggggaacatccgtgtgctaaatatcaacacggcgcttcgctca
ctcctccgtggccatacacagagagtcacggacatggctttcttttctgaggacgtacat
cgtttagcaagtgccagtgtagatgggcggatatacgtgtggaatattgatgaggggccc
gatgaggaaagtagaccacaaattacaggaaagatagaaattgccatacagattgtaggt
cacgctgaatcttaccacccaagaatctgttggcactctcataagcaagaacttctgtat
gttggaataaaaaattgtgtcttaagaatagatacgactaaagtgggaagaggaagagac
tttagcgtggaagaacctattaaatgtcatcttgacgagatgattgatggtgtgtgctta
gttggtaagcacgatggtgatgtgacagatttgtccatatctcactggatgaccacccgg
ctggcttcaggatcaaaagatggcatggtaaagatctgggatgatcgcaagtcagtgcct
ctatcagttctgaagccacatgatggccaagctgtttactcagtggcctttcttacagca
cctgaccgccccaatcacataaatcttatcacatcaggtcctctaagccaagaaattaaa
atttgggcttctaccaatgaagaaggttggttgttgccaagtgattctgagtcttggaat
tgtacccagaccttagaacttgttagttctctggaatctagggtcgaggaggcatttttc
aaccaagtcgcagtgctacctcaagcaagcattattttacttgcaaatgctaaaaagaat
gctatttatgcggtgcatgtcgagtatgatttggatcctgcttctactcacttggactat
atagcagattttacagtcggaatgcctattttaagtctgattggcatacatgaaagccaa
cctgatggtgagcaggttgttcagctctattgtatccaaacaatggccatacagctgtat
gggctggagttatcactttgttctcccccatctgatattactggacttggaagttaccct
acagaagttgctgatatgcaaggaatgctgcaacaggctgtgcaaagattccaggaactg
ttctcccaaacaaaattcaaggaagcagtggagctggctgtagaattccctcagggtctt
ctgcgaactcctgagactgttgcaaaattgaagagtgctcctcttcaacttgggcaagtg
tctccactcctgcactactttgccacattgctaactcaagggaagctcaatgcttacgag
tctcttgagttatctcgacttgctattaatcagaacggaaagagccttctggaaggttgg
ttggcggatgacaagttagagtgcagtgtagagctaggaaatcttgttaagacagtagac
gatgatcttgcactgaagatatacataagggctactacttccagttctgcactcaaggga
ccaggagaaataaactataaggattacgatggtgaagggtcatctatctttcctagcaac
ataacccctgggccttcttcagaaatgccagacctagcaagtgaaattgaagccctggag
cacatatttagtgatgcaagtgtacagccgacaaagctgtcttatgcacttataaaatct
gtaacaaataatttctctaaagtgattggtcgtggtggatttgcggttgtttaccaggga
gttcttcgaaacgggaagattgctctgaaaaagctttccttatctaatggtttttctgat
gagctatttgtggatgagattgagtgtttaacaaaggcaaagcacaataatgtagtaagg
tatctaggctattgtgcagatacacaaggggaattgatggaattcaacggaaggtgtgtg
atagcagaggtaccaaaaaggctgctctgctttgagtttgtcccaaatggaagccttcac
cgttatcttaaagggaagctttgtggagatgaatggcaagtacgttataaaatgattaag
gggatctgtcagggtttgcagtatcttcacaaaatccgcatcaatcatttggatctaaag
cctggaaatattctgttggatgttggcatggagccaaaaattgcagacttcggtttgtca
agatgctttgatgaagaacaatccagagtatttactaaacacatttatggaacacgggga
tatattgcaccagaaatcataaacaatggagaaatatcattcaagtcagatatattcgct
ttgggcattatcatcataaagctattaacggggcacaacgactatgatattgaaaattgg
cataaatcattaaatgcggactgcccacaagtgagaagatgcattgaaatagctcaagca
tgtgtggacgatgaccagcataaaagatttgctatagacgagataattcacaagctggat
gagctagagaccattgtggactctccagctatcagttaa
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