KEGG   Brachypodium distachyon (stiff brome): 100821328
Entry
100821328         CDS       T01717                                 
Name
(RefSeq) THO complex subunit 4D
  KO
K12881  THO complex subunit 4
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03013  Nucleocytoplasmic transport
bdi03015  mRNA surveillance pathway
bdi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100821328
  09122 Translation
   03013 Nucleocytoplasmic transport
    100821328
   03015 mRNA surveillance pathway
    100821328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100821328
   03041 Spliceosome [BR:bdi03041]
    100821328
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100821328
    TREX complex
     100821328
Spliceosome [BR:bdi03041]
 Complex C
  Other components
   EJC/TREX
    100821328
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100821328
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 SGP Antimicrobial_3
Other DBs
NCBI-GeneID: 100821328
NCBI-ProteinID: XP_003574500
UniProt: I1I772
LinkDB
Position
3:complement(38326208..38333423)
AA seq 270 aa
MSFYARRDGDRGSNRFHGGGGRGGHVMRGRSGLPPRGPLGINARPSARIIAKSFSRTKDM
TWRPDLFSDSMAASGIETGTKLYISNLDYRVSNEDIKELFSEVGHLKRFAVHFDGYGHQN
GTAEVVFTRRSDAVAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGRATRT
VVMTPEMGRRGGGASNRPLSNPANRCNRGAFQAGRGRGRGRAPFQAQFQGRGRGRGQFRG
RGRGRKQPEKTADDLDKDLDSYHAEAMKTD
NT seq 813 nt   +upstreamnt  +downstreamnt
atgtcattttatgcaagaagggatggagacaggggtagtaaccgctttcatggaggaggt
gggcgaggtggacatgtcatgcgtggaagatcaggactgcctcctcgaggaccacttggg
attaacgcccgaccatctgcacgcattattgccaagtctttcagcagaaccaaagatatg
acctggagacctgatctgtttagtgatagtatggcggctagtggaatagaaactggtaca
aagttgtacatttcaaacctggactatcgtgtttcgaacgaggatataaaggagctgttt
tcagaagttggtcacttgaaacgctttgctgttcacttcgatggatatggtcaccaaaat
ggtacggcggaggtggtatttacaaggaggagtgatgcggttgctgcattgaaacgttat
aataatgttctacttgatgggaaagctatgaagatagaagttattggaagtgacttgggt
ttgcctatgacacctcgtataaatgtcgtcggggcttctaatggcagagctacgagaaca
gttgtcatgacgcctgaaatgggtcgacgtggtggtggtgccagcaataggcctttgagt
aatcctgccaacagatgcaatcgtggtgctttccaagctggccgaggccgaggcagaggt
cgtgccccattccaagcccagttccagggacgaggcaggggtcgcggtcaattccggggc
cgcggtcggggaagaaagcaaccagagaagactgcagatgacctggacaaagatctggat
tcctatcatgccgaggcaatgaagaccgactga

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