Brachypodium distachyon (stiff brome): 100821547
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Entry
100821547 CDS
T01717
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100821547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100821547
03009 Ribosome biogenesis [BR:
bdi03009
]
100821547
04131 Membrane trafficking [BR:
bdi04131
]
100821547
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bdi04147
]
100821547
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
100821547
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
100821547
Membrane trafficking [BR:
bdi04131
]
SNARE
SNARE associated proteins
Others
100821547
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100821547
Exosome [BR:
bdi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100821547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
AAA_5
AAA_22
AAA_2
CDC48_2
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
ATPase_2
Parvo_NS1
AAA_18
Viral_helicase1
IstB_IS21
AAA_lid_PRS2_C
Vps4_C
ABC_tran
AAA_7
NB-ARC
TsaE
DUF815
NACHT
ResIII
AAA_24
Zeta_toxin
Sigma54_activ_2
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
100821547
NCBI-ProteinID:
XP_003558792
UniProt:
I1H9M8
LinkDB
All DBs
Position
1:72185403..72190009
Genome browser
AA seq
811 aa
AA seq
DB search
MATSPTQGEPSSSDPKSKKDYSTAILERKKSPNRLVVDEATNDDNSVLALHPETMERLQL
FRGDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKTVRKNLRVRLGDVVSVHQCPDVKYG
KRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPA
EYCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKS
IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE
AEKNAPAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNS
IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVELEHISKDTHGFVGADLA
ALCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALTTSNPSALRETVVEVP
NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA
NECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGD
AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDVES
RLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEMERR
RKDNPEAMEEDVVDEIAEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEF
RFPDQPAAGAAAAADPFASAAAAAEDDDLYS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcgcctacccagggcgagccgtcctcctccgatccgaagtcgaagaaggac
tactcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggcc
accaatgacgacaactccgtcctcgcgctgcacccggagaccatggagaggctccagctc
ttccgcggggacactgtcctgcttaagggtaagaagagaaaggacacaatctgcatcgtg
cttgcggatgacacatgtgaggagccaaagatccggatgaacaaaactgttaggaagaac
ttgagagtgcgacttggtgatgtggtgtctgttcatcaatgcccagatgtcaaatacggg
aagcgtgtgcacatacttcctattgacgacacggttgaaggcatcaccggaaacttgttt
gatgctttcttgaaaccatacttccttgaagcttaccgtcctttgagaaaaggagacctt
ttccttgtgaggggtggaatgaggagtgtggaattcaaagttatagagactgatcccgca
gagtattgcattgttgcgcctgacacggagatattctgtgatggtgagcctatcaagaga
gaagacgaggaaaggctagacgaggttggctatgatgatgttggtggagttaggaaacaa
atggcccagatcagagagctggtcgaactcccactgcgccatccccaacttttcaagtct
attggtgttaagccaccaaagggcatattgctgtacggaccacctggctctggcaagacc
ctaattgctagagctgtcgctaatgaaacaggtgcattcttctttctgattaatggccca
gaaatcatgtcgaagctagcaggagaaagtgagagtaatctcagaaaggcattcgaagaa
gctgagaagaatgcaccagccatcatcttcattgatgagattgattcaatagccccaaag
agagaaaagacgaatggagaagttgaaaggcgtattgtttcacagctgttgactcttatg
gatggtctgaaatcccgtgctcatgttattgttatgggtgctacaaatcggccaaacagc
attgatcctgcgcttaggagatttggcaggtttgaccgggagattgacattggtgttcct
gatgaagttgggcgccttgaagttcttcgtattcacactaaaaacatgaagctagctgaa
gacgtcgagctggaacatatttcaaaagacacccatgggtttgttggtgcagatttagct
gccctttgcactgaggctgccctccagtgcattcgtgagaagatggatattattgatctc
gaggatgagaccatagatgctgaaatactgaactctatggctgttacaaacgaccacttc
aagactgcactaacgaccagcaacccatctgctctccgtgaaactgttgttgaagttcca
aatgtctcttgggaagatattggtggtctggagaatgtcaaaagggagttgcaggagact
gtccagtatcctgtggagcatccagagaaatttgagaagtttggcatgtctccttccaaa
ggtgttctgttctatggtcctcccggctgtggtaaaacattgttggccaaggcaattgca
aacgagtgccaggctaacttcatcagtgtcaaaggacctgagctgctcaccatgtggttt
ggtgagagtgaggctaatgtgcgtgagatttttgacaaggctagggggtcagcaccatgt
gtcctcttctttgatgagcttgattcaattgctacccagagaggaagcagtgttggggat
gctggaggtgcggctgatagagtgctgaaccagctgctgactgagatggatggcatgaac
gcaaagaaaactgtatttatcatcggtgctacgaacaggccagacatcatagaccctgcc
ttgctcaggccagggcgtcttgatcagcttatctacatccctcttcctgatgttgagtcc
aggctccagatcttcaaagcatgcctcaggaagtctcctgtggccaaggatgtggacttg
aatgctcttgccaaatacacacaagggttcagtggtgccgacatcacagaaatttgtcag
cgtgcttgcaaatatgccatcagggagaatattgaaaaggacatcgaaatggaaaggcgt
aggaaggacaatcctgaagccatggaggaagatgtggtggatgagatcgctgagatcagg
gctgctcactttgaggagtcgatgaagtatgcacgccggagtgtgagcgacgcggacatt
cgcaagtaccaggcctttgcccagacgctgcagcagtctcgtggatttggcagcgagttc
cggttccctgatcagcccgctgctggcgctgccgctgctgccgacccttttgcatccgct
gccgctgcagctgaagatgatgatttatatagctaa
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