Brachypodium distachyon (stiff brome): 100821616
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Entry
100821616 CDS
T01717
Name
(RefSeq) SWI/SNF complex subunit SWI3B isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100821616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100821616
03036 Chromosome and associated proteins [BR:
bdi03036
]
100821616
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100821616
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100821616
PBAF complex
100821616
GBAF(ncBAF) complex
100821616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
DUF4230
Pou
Na_trans_assoc
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
100821616
NCBI-ProteinID:
XP_024318089
LinkDB
All DBs
Position
3:5076208..5081467
Genome browser
AA seq
497 aa
AA seq
DB search
MATPPAATATNSAPTPPKPPYKAPPFSQPPSTAGAGKTETPAASTSTAAAAVVAAVAATG
AAAEEPSYIITVPSYSAWFSYDSVSDTERRLMPEFFQGEAAAASGSRGPEAYKYYRDTLV
KRFRVRPERRLTLTEARRGLIGDIGSVRRVFDFLEEWGLINYGVSLPGVKQGRDKREEPV
APQSSLPAGVSAPKKLCIGCRTVCGQAYFTCEKADITICCRCYVRANYRPGLTPADFKKV
ETSEDAKSDWTDKETLHLLEAVMQYGEDWKKISEHVGSRSEKDCIARLLRLPFGEQFMGP
KEDKMQFETDDDITDESRAEISKRVRLTPLADASNPIMAQVAFLSAIVGSDVATAAAQAA
ISAQSQVDETNDSPADSSIGSPKEEVSSAESCYTNGFSANDLLKEASANARVQLEKERKD
IEQSLSDIVDVQMKEIQAKICRFEQKELLMEKERQQLHYLQKLLFADQLAVVQHQCRPHA
VTAENEADENPKPVLTS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggccacaccgccggcggccaccgccaccaattccgcgccaacgccaccgaagcctccg
tacaaggctccaccgttttctcagcccccttccaccgctggcgctggcaagacggagacc
cctgccgcctccacctcgaccgccgccgccgccgtagtcgcagcagtcgccgccacggga
gctgcagccgaggagccatcgtacatcatcaccgtccctagctactcagcgtggttctcg
tatgacagcgtcagcgacacggagcgccgcctcatgccggagttcttccaaggggaggct
gcggcggcctctggatcccgcggccccgaagcatacaagtactaccgtgacacccttgtg
aagaggtttcgggtcaggccagagcggcggctcactctcaccgaggccaggcggggcctt
atcggcgacattggttctgtgcgccgtgtgtttgatttcctcgaggaatgggggctcatc
aactatggtgtttcgctgccaggagtgaagcaggggagagataagagggaggagccggtg
gcacctcagtcttcattgcctgctggggtatcagcacctaagaagctttgcatagggtgc
cgcaccgtctgcggacaagcctatttcacctgtgaaaaggcagatataactatctgttgt
agatgttatgtgcgtgccaactaccgacctggtcttactccagctgacttcaagaaagtt
gaaactagtgaagatgcaaaatctgattggacagacaaggaaactcttcatctgcttgag
gccgtcatgcaatatggagaagactggaagaagatttccgagcatgttggcagtcgatcc
gagaaagactgcattgctagactcttaagattaccttttggagaacagttcatgggacct
aaggaggacaaaatgcagtttgagaccgatgatgatattactgatgaatctagagcagag
atctcaaaacgagttcgtctcacgccactggcagatgctagtaatccaattatggctcag
gttgcgttcttgtcggccattgttggttcagatgttgctacagcagcagctcaagcagct
atttctgcgcagtcccaggttgatgagacaaatgatagcccagctgattcctcaattggc
agccccaaggaagaagtgtcctctgcagaatcttgttacacaaatgggttttcagccaac
gatttgctcaaagaggcatctgctaatgcacgagtgcaacttgaaaaggaacggaaggat
atagagcaatctttatccgatatagtggatgtgcagatgaaggaaatccaagctaagata
tgccgttttgaacagaaggagctgctgatggagaaagagaggcagcagctccattattta
cagaaattgcttttcgccgatcaacttgcggttgtgcagcatcagtgcagaccccatgct
gtgactgctgagaacgaggctgatgagaatcctaaacctgttctcacaagctaa
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