Brachypodium distachyon (stiff brome): 100821638
Help
Entry
100821638 CDS
T01717
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X4
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100821638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100821638
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
100821638
SWR1 complex
100821638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Motif
Other DBs
NCBI-GeneID:
100821638
NCBI-ProteinID:
XP_010228385
LinkDB
All DBs
Position
1:complement(56615765..56630773)
Genome browser
AA seq
2042 aa
AA seq
DB search
MASKGARSKLDHETRARRKKALEAPREPRKPKVHWDHVLGEMVWLAKEFESERKWKLSMA
KKIAQRANMGIVDQATKDEKKQKEGEYRLRKVALNISKDVKKFWTKIEKLVLYKNQLEVE
ERKKKALDKQLDFLLGQTERYSTMLAENLVDVPHLQTQENGPLQTNLPSQEEVAEPSQTN
QPSLEEVADPLQTNQPFHEEVAEENTNALMHDDLDKMEIDDDYNSSLNEEPEDDEHTIDE
DEAQITEAERNEELAALQAEADLPLDDILKLYAKTKVSRESSPDSKDTFSKSDLKNLMKD
PSNQANGCNHESGGTSSDEGNSSEEVDDSYSYTEFVKKNHGKSNGSISSVGEQGDKDYVA
ADEGKDDEATLSEEEELAKGDSPDPLDEIKLLQKESEIPLEELLARYQMDGYADGVTTEL
ENSPTHYNEEVNTDMSLDGQSVDILKLNNDMLENHEITDMLERKLVSGNALQPEIVPESS
VQGCSVKEDELTDAKVANEETGDSVIDDAAAAARSAQPTGNTFSTTSVRTKFPFLLKHSL
REYQHIGLDWLVAMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSV
MLNWETEFLKWCPAFKILTYFGSAKERKQKRQGWMKPNFFHVCITTYRLVIQDSKAFKRK
KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQ
SHQEFKDWFCNPISGMVEGQDKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPQKHEHVIY
CRLSRRQRNLYEDFIANSETQATLTSGNYFGMISIIMQLRKVCNHPDLFEGRPIISSFDM
AGINMQISSSVCMVLDKGPFSQADLSDMNLVFTQNEFNMTSWEVDEVADAFSPGITSRGS
GAEFSCSNKDGQRGIGKNIFEEIQKALQEERMKEAKERAASIAWWNRIRCQKRPVYGTNI
RELLTIRHPICDVLEKKSNPLCHMEFSSSLADLVLSSVERFNKMLGFIESFTFAIPAARA
ATPICWCKKRKSPVLLEPAYREQCMNEFSPILSPIRPAIVRRQVYFPDRRLIQFDCGKLQ
ELAILLRRLKSEGHRALIFTQMTKMLDTLEEFINLYGYTYLRLDGSTQPEERQTLMQRFN
TNPKYFLFILSTRSGGVGVNLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVNIYRL
ISESTIEENILKKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHAPLNVEDQQKDRS
MPSVVSNETGLALSNADVEAAIRQAEDEADYMALKRLEQEEAADNQEFSEEAAGRLEDDE
LVNEEAKPDEHCSAEHKHQCSDVDNDKSVALPVNQLDEEKALRLAAGDGDMDMLADVKQM
AAAAAAAGQASSSFENQLRPIDRYAMRFLELWDPIIDKAAVNYQANVVEEEWELERIEKL
KEDLEAEIDEDQEPLSYETWDVDFATTAYRQHVEALAKKQLLEEQEKQACKAAKELEETN
DIISHRKKSKKNKRKAGKFKSLKRGRLSSESEAMLDETSVDTMSIDGNAPSPELISDESP
HHCSHKRKKMVSRNEEVNSSSRSLKKFKKAPKSNCISESSSHKHLLEGKQLKLMDEVNFS
DPKLVSIRSDGRISTPCMPVKRVMVIKPERLKRKGLIWPRDCVPDSWTNEEDAVLCGTVH
EYGPVWELASEFLHSIPGGAFYRGRYRHPVHCCERFRELICKHVLSAMDNTNSEKVPSGT
GKAILKVSEDQTQMLLNAISEIPNNELLLQKHFMAILSSVWRSKCGHEPRRVTSTCSSAL
NKPVRLNEKWSMTNYRPTSNLIKTALADAQAQCPRAVLPRNQESGRNYLELVLDFRTDQH
AYEADFPSVVNVSILEPEPVKRAIVQVDQSLLSGLSHRNAEKRFRIASEACFDGEGSHWA
SSAFHVYDAARHKSGPKSVGKHKTSSESGRPAKSKIQRTTEPQDVPTAMNDFLRAPGQLL
ASAAEFHIAQSLSDFGINDSEFTCFHDLPLETDTEFAPCQYELASLPGIEELDPLSDFTD
IG
NT seq
6129 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaggtgcccggtcaaagctagatcatgagactagagctagacgcaagaag
gctcttgaagctccaagggagcctcggaagccaaaagttcactgggaccatgttcttggg
gaaatggtttggctggcaaaggagtttgagtctgagagaaaatggaagttgtccatggct
aaaaagattgctcaaagggccaacatgggtatagtcgaccaggcaacaaaggatgagaaa
aaacagaaggagggggaatatcgcctgagaaaagtcgccctaaatatttctaaggacgtg
aagaagttctggaccaagatagagaagttggttctctataagaatcaactagaggttgag
gaaaggaagaaaaaggccctcgataagcagcttgatttccttttaggtcagactgaaaga
tattctacaatgttggctgaaaaccttgtggatgttccccatctgcaaacacaggaaaat
ggaccgctgcagacaaatttaccatcccaggaggaagtagcagaaccttcgcagactaat
caaccatcgctggaggaagttgcagatcctttgcagacaaatcaaccattccatgaggaa
gtagccgaagagaacacaaatgcgctaatgcatgatgatctagataaaatggaaattgat
gatgattacaatagctccttgaatgaagagccggaagatgatgagcacacaattgatgag
gatgaagctcaaatcacggaggctgagcgcaatgaagaattagctgctttgcaggcagaa
gctgatctaccactggatgatattctcaagttgtatgccaaaaccaaagttagcagggag
agcagtccggatagcaaagatactttcagtaagtcagatttaaagaatttgatgaaagat
ccttcaaaccaagctaatggctgtaatcatgaatctggtggtacttcaagtgatgaaggc
aattcttccgaggaagttgatgatagctactcttacactgagtttgtgaagaagaatcat
gggaaaagtaatggcagcatctcctctgttggtgagcagggggacaaagattatgttgct
gctgatgaaggaaaggatgatgaagcaactttatctgaagaggaagagctggcaaaggga
gacagccctgatcctctggatgagataaaattactgcagaaagagagtgagatcccacta
gaggaacttcttgcgaggtaccaaatggatggctacgcagatggcgtaacaacagaattg
gagaattcacctacacattataatgaagaggttaatactgacatgtctctggatggtcaa
tctgtggacattttgaaactgaacaatgacatgctcgaaaatcacgaaataacagacatg
ctggaaagaaagcttgtgagcggtaatgccctgcaaccagagatagtaccagaatctagc
gtacaaggatgttctgttaaagaagatgaactgactgatgctaaggtggccaatgaggaa
actggtgacagtgtaattgatgatgctgctgctgctgcaagatcagcacaaccaactggg
aacaccttctcaacaacaagcgtacgcacgaaattcccattcctcctcaagcattctctt
cgggaataccagcatattggcttggattggttggttgctatgtatgaaaagaggctgaat
ggaattctagcagatgaaatgggtttaggaaagacgataatgactatctccttgctggca
caccttgcatgtgagaaggggatatggggcccacatcttattgttgtcccaaccagtgtt
atgttaaattgggaaactgaatttctgaagtggtgtcctgcctttaaaatactgacttat
tttggaagtgcaaaggagagaaagcagaaacgtcagggttggatgaaaccaaattttttc
catgtatgcatcacgacatacagacttgttattcaggactccaaagcgttcaagcgaaaa
aagtggaagtatcttattcttgatgaggctcatctgataaagaactggaaatcacaaaga
tggcagactctgctaaattttaattcaaaacgacgtattcttttgactggaactcctttg
caaaatgaccttatggaactttggtctctcatgcattttttgatgccccatgtattccag
tctcaccaagagttcaaggattggttctgcaatccaatttcaggaatggtggagggccaa
gacaaggtaaacaaggaagttatagatcggttgcacaatgtccttcgtccatttatacta
cgccgattgaaacgagatgttgagaaacagttaccacagaagcatgagcatgtcatctat
tgccgactttcaagaaggcaaagaaacttgtatgaagattttattgccaactcagagaca
caagcaacactgacaagtgggaattattttggtatgattagtatcattatgcaactcaga
aaggtttgtaaccacccagatctttttgaaggccgtccaattatcagctcatttgacatg
gcaggaattaacatgcagatcagctcttctgtttgtatggtccttgataaggggccattt
tctcaggctgatctatctgatatgaaccttgtatttacccaaaatgaatttaatatgact
tcttgggaggtggatgaggttgctgatgccttttctccaggcatcacctctaggggctct
ggtgcagagttctcctgctctaacaaggatggtcagagaggtattggaaaaaatattttt
gaagaaattcagaaagccttgcaggaggagagaatgaaagaagccaaagaaagagcagct
tcaattgcatggtggaataggataagatgccagaagaggcctgtttatggcacaaacatt
agagagcttctgaccataagacaccctatctgtgatgttcttgagaagaagagcaatccc
ttgtgccacatggaattttcctcgagtcttgcagatcttgttctttcatcagtggaacgc
ttcaataaaatgcttggctttattgaatcatttacttttgcaattcctgctgcacgggca
gctactcctatttgctggtgcaaaaaaaggaagtctcctgttcttcttgaaccagcatac
agagaacaatgcatgaatgagttctctcccattctctctcctatcaggcctgcaattgtc
cgccgtcaagtgtactttcctgacagacgtttgatccagtttgattgtgggaagttgcag
gagcttgctattttgctgagacgtttgaagtcagaaggacacagggccttgatatttact
cagatgactaagatgcttgatactctggaggagttcattaatttgtatgggtatacatat
ttgcggttagatggttctacccagccagaagagaggcagacactaatgcagaggtttaat
acaaacccgaagtattttcttttcattttatccactcgtagtggtggtgtgggagtcaac
ctagtaggagcagacactgttatattctatgacagtgactggaaccctgcaatggatcaa
caagcccaagacagatgtcacaggataggacaaactcgggaagttaacatctatagacta
attagtgaaagcactatagaggagaatattctcaagaaagcaaatcagaagcgggctctt
gatgatttagtgatacaacgtggtagttacaatacagaattcttcaagaagcttgaccct
atggagttcttttctggccatgcacctcttaatgtcgaagatcagcagaaggatcgctct
atgccttctgtagtctcaaatgaaacaggtcttgcgctgtcaaacgcggatgttgaagca
gctattagacaagcagaggatgaagctgactatatggctctgaaaaggttggagcaggaa
gaggctgcagacaatcaagaatttagtgaggaggctgctggaagactagaagatgacgag
cttgtaaatgaggaagcgaaacctgacgagcactgtagtgcagagcataaacatcaatgt
tctgatgtggataacgacaaaagtgttgctttacctgtgaaccaattagatgaagaaaag
gctcttagattggctgcaggtgatggagatatggacatgcttgctgatgtcaagcagatg
gctgccgcagctgctgcagcagggcaagcgagttcatctttcgaaaatcagctccggcca
attgatagatatgcaatgcggtttttggagctctgggatcctataattgacaaagctgct
gtaaactatcaggcgaatgttgtagaggaagaatgggaacttgaacgcattgaaaaactc
aaagaggatttagaagcagaaattgatgaagaccaggaaccactttcttatgagacatgg
gatgttgattttgctactacagcgtatcgccaacatgttgaggctctagctaaaaagcag
ttgttggaagagcaggaaaaacaagcttgtaaagcagccaaagagttggaggaaacaaat
gatataattagtcaccgcaaaaagtcaaagaagaacaaaagaaaggcaggcaagtttaaa
tccttaaaaaggggacgtttgtcatctgagtcagaggccatgcttgatgaaacttctgtt
gatactatgagtattgatggcaatgcaccctcgccagagcttattagtgatgaatcacca
caccattgttctcataagcgtaaaaagatggtgtctagaaatgaggaagtcaacagcagt
agcagaagcctgaagaagtttaagaaagcccccaagtcaaattgtatttcggaatcctca
tcgcataagcacttgcttgaaggcaagcagcttaagttgatggacgaagttaatttttct
gatcccaaattggtgagcattaggagtgatggccggatttccaccccttgcatgccagta
aaacgtgttatggtaattaagcctgagaggttgaagaggaagggtcttatatggcctcga
gattgtgtgcctgattcatggactaatgaggaagatgcggttctttgtggaactgtacat
gagtacggtcctgtttgggagctggctagtgagtttcttcattccataccgggtggtgca
ttttataggggaagataccgtcatcctgtgcattgctgtgagagattccgagaattaatc
tgcaaacatgtattgtctgcaatggacaatacgaacagtgagaaggttccttctggtact
gggaaggctatcttgaaagtatctgaggaccaaactcagatgttgttgaatgcgatcagt
gaaattcctaacaatgagctgcttctccagaaacatttcatggccatactttcttctgtt
tggagatccaaatgtggtcatgaaccccgccgtgttacaagtacttgctcgagtgcactc
aataagcctgttagattgaatgagaagtggtccatgacaaactacagaccaacctctaat
ctcataaagacagccctcgcagatgctcaggcccaatgtccaagagcggtactaccaagg
aaccaggaatccggccggaactatttggagttagttttggatttccggacagatcaacat
gcttatgaggcagactttccatctgtagtgaatgtgtccattctagaaccagaacctgtt
aaacgtgccattgttcaggtggaccaatcactgttgtctggactttctcataggaatgct
gagaagagattcaggatagcatctgaagcttgttttgatggggaaggatctcattgggca
tcgtctgctttccacgtttatgatgctgctcggcataagtctggcccaaagtctgttgga
aagcacaaaacatcttcagaatcaggaagacctgcaaaatctaaaattcagaggactact
gaaccgcaggatgtgccaactgctatgaatgattttctccgggctccgggtcaacttttg
gcaagtgcagctgagttccacattgcgcagtccctctctgactttggcattaatgattct
gagttcacctgcttccatgatcttcctctagagactgacaccgagttcgccccttgccag
tatgagcttgcttcccttcctggtatcgaggagttggatcctctttcagatttcacagac
atcggatga
DBGET
integrated database retrieval system
