Brachypodium distachyon (stiff brome): 100821768
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Entry
100821768 CDS
T01717
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100821768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100821768
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100821768
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100821768
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100821768
NCBI-ProteinID:
XP_003579503
UniProt:
I1J3I3
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All DBs
Position
5:complement(27753900..27755285)
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AA seq
353 aa
AA seq
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MPSSGFAFVPGSGGKKAPAVEIRQVWAYNMDLELKAMRSAAERCPFVAMDTEFPGVIHTH
PTKHHAALTAAERYELLKANVDALQLIQVGLTFAATADSPPEVAFEVNLRGFDPRIHRHA
PDSVALLAAQGIDFAAHRDHGVDPRVFAAMLRTAGLVPGKWAGSPRTWVTFSAGYDFGYM
VKLLIGRKLPASMADFQGLVRAFFGDEVYDVKQMMTGCGGLYGGLERVAGSLGVQRVAGR
CHQAGSDSVLTWDAYRRMRQVYFPQHGVLRAAYAGVIFGLEPCPPMAATAAQVNCGGGGG
YYSFPAMAPAQVASIGGGSWVVPPAAARMASGGRKGARRARGSKVAPAAAAVL
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcttcgggatttgccttcgtccccggctccggcggcaagaaggcgccggcggtg
gagatccgccaggtgtgggcttacaacatggacttggagctcaaggcgatgcggtccgcg
gcggagcggtgcccgttcgtggccatggacacggagttccccggcgtgatccacacccac
cccaccaagcaccacgccgcgctcaccgccgccgagcgctacgagctcctcaaggccaac
gtcgacgccctgcagctcatccaggtaggcctcaccttcgccgccaccgccgattctccc
cccgaggtcgccttcgaggtcaacctccgcggattcgacccgcggatccaccgccacgcg
ccggactccgtcgccctgctcgcggcgcaggggatcgacttcgcggcgcaccgcgaccac
ggcgtcgacccgcgcgtgttcgccgccatgctcaggaccgccgggctcgtgcccgggaag
tgggccgggtcgccgcgcacctgggtgaccttcagcgccggctacgacttcgggtacatg
gtgaagctcctgattgggcggaagctgccggcgtccatggcggacttccagggcctcgtg
cgcgccttctttggggacgaggtttatgatgtcaagcagatgatgaccggctgcggcggg
ctctacggcgggctggagcgcgtcgcgggctcgctcggcgtgcagcgcgtggccgggcgg
tgccaccaggccggctccgacagcgtgctcacctgggacgcctacaggaggatgcggcag
gtgtacttcccgcagcacggcgtgctgcgcgccgcctatgctggcgtcatcttcgggctc
gagccctgccctcccatggcggccacggcggcgcaggtgaactgcggcggcggtggcggc
tactacagtttcccggccatggcgccggcgcaggtggcgagcatcggcggcgggagctgg
gtggtgccaccggcggcggcgcgcatggcgagcggcgggcgcaagggtgcgcgcagggcg
aggggcagcaaggtggcgccggcggcagcggcggtgctctga
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