Brachypodium distachyon (stiff brome): 100821968
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Entry
100821968 CDS
T01717
Name
(RefSeq) RNA-binding protein Y14B-like
KO
K12876
RNA-binding protein 8A
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100821968
09122 Translation
03013 Nucleocytoplasmic transport
100821968
03015 mRNA surveillance pathway
100821968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100821968
03041 Spliceosome [BR:
bdi03041
]
100821968
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100821968
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100821968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
100821968
NCBI-ProteinID:
XP_003559268
UniProt:
I1GLV0
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All DBs
Position
1:3051231..3055383
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AA seq
193 aa
AA seq
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MGASATEDVEFVEYDLEDDDDGMDEDDQAAARALPVPHIATPAVARTRGRLLGRSPSILS
SSRDRFDSIPGPGTSQHGPQRSIEGWIILVSGVKEDAEESDLFDAFRDFGRVKDLHFNLE
RRTGYGKGYALVEYESFEEAKTAIKAMNGRQLLTKTIHVDWAFNRGPIQKVISTRPSRPR
SRTPPRRLAALTY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgtctgcaacggaggacgtggagttcgtggagtacgacctggaggacgacgac
gacggcatggacgaggacgaccaggccgcggcccgcgcgctccccgtgccccacatcgcc
acccccgccgtggctcgcacccggggacgcctcctcggccgcagcccctccatcctctcc
tccagccgcgaccgcttcgactccatccctggccccggcacctcccagcacggcccgcag
cgctcaattgaaggatggataatactcgtctcaggagtcaaagaagatgcggaagaaagt
gatctattcgatgctttccgtgactttggtcgtgtcaaggacttgcatttcaatctggaa
cgccgcactggatacggcaagggatatgcattggttgaatatgaaagttttgaggaagca
aaaactgcaatcaaagcaatgaatgggaggcagctgttaacaaagactatccatgttgat
tgggcattcaacagaggtcctatacagaaggtcatcagtacaaggccatcacgtccacga
tctaggactccacctcgcaggcttgctgccttgacatactga
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