Brachypodium distachyon (stiff brome): 100822126
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Entry
100822126 CDS
T01717
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bdi03009
]
100822126
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
Other 90S particles
100822126
Pre-60S particles
Other pre-60S particles
100822126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
MMS19_N
DUF7673
Cytochrome_P460
Motif
Other DBs
NCBI-GeneID:
100822126
NCBI-ProteinID:
XP_003570699
UniProt:
I1IFJ9
LinkDB
All DBs
Position
3:58866699..58874212
Genome browser
AA seq
1271 aa
AA seq
DB search
MADVDMDELPQTPRSAAGDDDLSMFSGEPDLAAAILARLGGSPREDDQHLCATAAAMAQA
VNDRGVAATTVAYFAAASAALAPLARAGPGAADRHVAGALLAFLSAAVPALPPAVVRARG
REVADDVARVLEFPSTPDSGVRAGIRCLAHLISAGDKASWEAVEPLYAVVLRLVTDHRPK
VRKQSHACLRDILLSFQRQAVLVPASEGIARCFERFLLLAGGSNDVNTGSAAEGPKGAKE
VLYILNALKCCLPLMASKPSNTILKYFKALLGLHQPILTRNILEILHAVGDSPTLQLKPD
VLLDLMCSLGLSVSTERKSGDELASIAQLLNIGTRKVYSQNKNIFIVKLPLVFTSLADIL
ASEFEEARFSAVETFKGLIDNCIDENLVSRGITQIKARRQGLKSDPTVIEKICVILEGLL
DVRYSDVWDKSFHVISVAFDKLGESSSDLLPEALRNLADMQNLSDDDFSFRKQLNACLGS
AVAAMGPKNVLDILHIQSICDENEWILPIFERHIIGASLQFFLRDILGIVRAVEKTIPKL
LKDDKLFSAKRAEGYVYSLWSLLPSCCNYPCDTSSNFGVLQNVLCDTLQNQPDLRGIICS
SIQILIKQNKEALSATKGDDILVDDEASKSEKRAKERYTKGIAEENLKAIQAFSSKFLEL
LCSIFLSSSKDSIGFLQPAISEIASISDKDVVGKFFLDAMRKLLDATKAVNAQQVDDSSM
QIEDGSNTNNMTRALRLDFAASLLPGLAAKSINVLFSYVKPAIKDSDSLVQKRAYKVLSM
LLKDAEFLERNLDVLLDLMISSLPCQFPSKRYRLECLHHLIVYILKDPSKLRKREIVSSF
LTEILLALKEANKKTRNRAYDVLIEIGRACEDAENDGRKDSLYQFFDMVAGGLAAQTPHA
ISAAVTGLARLTYEFSDLIGVAYKLLPSTFLLMQRNNRELVKANLGFIKALVAKSKADVL
DEHLKGVVEGLLSWQSDKKNSLKAKVKSLVEILVKKCGLDAVKAVMPEEHMKLLTNIRKI
NERKMRKGNSSEDGEAMSLTSRATRQSGWNHTQMFSDFGSDEDDSNGAFSKQHTVTSRQG
SKASTRYNRKRQDKNLMEKFIDHSTGEPLDLLDQKTMRLALKSTVPGRKRAAPDDDDDEM
ELDPEGRIIVRDEHERRKKKPVSHDDEPDDKSSVRSQSMKRRKTADSGWSYTGHDYTSKK
AGGDLKKKDKMEPYAYWPLDRKLLNRRSDRKASARKGMASVMKMTKRLEGKSASGVLAAK
KAQKRKQKKNK
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtcgacatggacgagctcccacagaccccgcgctccgccgccggggacgac
gacctctccatgttctccggcgagccggacctcgcggcggccatccttgcccgcctcggc
ggctcgccgcgggaggacgaccagcacctctgcgccaccgccgccgccatggcgcaggcc
gtgaacgaccgcggcgtcgccgccaccaccgtcgcctacttcgcagccgcctccgccgcg
ctggccccgctcgcgcgcgcggggcccggggccgccgaccgccacgtcgcgggcgcgctc
ctcgccttcctctccgcggcggtgcccgcgctcccgcccgccgtcgtgcgtgcccgcggc
cgggaggtcgcggacgacgtggcgcgcgtgctcgagttcccttccacgcccgactccggc
gtcagggcggggatcaggtgcctcgcgcatttgatatccgcgggagataaggccagctgg
gaggcagtggagccgctatacgctgtggttctacggctcgttaccgatcaccggccaaag
gtgcgaaagcaatctcatgcttgcttgcgagacattctcttaagtttccagagacaagct
gttttggttccggcgagcgaaggaatagcaagatgttttgaacgatttttgctgcttgct
ggaggatccaatgatgtaaatacaggttcagcagcagaaggaccaaagggggctaaggag
gtcttgtatattttgaatgctctgaagtgctgtcttcctctgatggcatccaagccttcc
aatacaattttaaagtattttaaagcacttttgggtctccatcaaccaattttgacaagg
aacatattggagattcttcatgctgttggtgacagtccaactctacagcttaagcctgat
gtgctattggatcttatgtgctctttggggttatcggtctccacagaaagaaaatcagga
gatgaactggcttcaattgcacagcttctaaatattggcactaggaaagtttacagtcag
aataagaacatatttattgtaaagctcccgttagtatttacttcgcttgcagatatactg
gcaagtgaatttgaagaagcaaggttttctgctgtggaaactttcaaaggattaatagat
aattgcattgatgagaacttggtgtcccgtggcattacccagattaaggctagacgtcaa
gggttgaagtctgatcccaccgtcatagagaagatatgtgttatcctagagggcctgcta
gatgtccgctacagtgatgtctgggacaaatcatttcatgtaatttcagtggcatttgac
aagttgggtgagtcttcatctgacctattgccagaagcacttaggaacttggcagatatg
cagaacttgtcagatgatgacttttctttccggaagcagctcaatgcatgtcttggttca
gcagttgctgcaatgggaccaaagaatgtccttgatattctacacattcagtcaatttgt
gatgaaaatgaatggattctacctatcttcgaaaggcacattattggtgctagtttgcaa
tttttcttgagagatattctaggcattgttagagctgtggagaagactattcccaagctt
ttaaaagacgacaagcttttctccgccaagagagcagaaggttatgtgtattcgctttgg
tctttgttaccatcatgttgcaactatccatgtgatacttcaagcaatttcggagttcta
cagaatgttctatgtgacactctccagaaccagcctgacttacgcggtatcatttgttcc
agtattcagattttaattaaacaaaacaaggaagctttgtcggccactaaaggcgatgat
attcttgttgatgatgaagcaagcaaatcggaaaaaagagcgaaggagcgctataccaaa
gggatagcagaagaaaacttgaaagcgattcaggctttctcttcaaagtttttggaacta
ttatgttctatattcttgtcatcctccaaggactctattggattcttacagcctgcgata
agtgagatagcatccatatcagacaaagacgtagttggcaagttcttccttgatgcaatg
aggaagttgctggatgcgacaaaggctgtcaatgcacagcaagtggatgacagttcaatg
cagattgaagacggttctaatacaaataacatgacgagggctctccgtttggactttgcc
gcttctttattgcctggattagctgcaaagtctatcaatgtgctattcagttatgtaaaa
cctgcaattaaggatagtgactcgttggttcaaaaaagagcatacaaggttctctcaatg
ctacttaaggatgctgaatttcttgaaagaaatttagatgtcctgttggatttgatgatt
tcatcgttgccatgtcagtttccatcgaaacggtacaggcttgaatgcctccaccacctt
attgtttacattttgaaggatccatctaagcttaggaagagggaaattgtcagttcattc
ctcactgaaatacttctcgccttaaaggaggccaacaagaaaaccagaaacagagcttat
gatgtgcttattgaaattggccgtgcttgtgaagatgctgaaaatgatgggaggaaggac
agcttgtaccagttctttgacatggtagctggtggtctggctgctcaaactccacatgcg
attagtgctgctgtgactgggttagctcgcttgacctatgagttctcagatcttattgga
gtagcgtacaagctgctcccttcaacttttctgcttatgcagaggaacaaccgagaactt
gtcaaagccaacttaggttttatcaaagcattagttgctaaatctaaagctgatgtgtta
gacgagcacttgaagggagtcgttgagggtctgctgagctggcaaagtgataagaagaat
tctttaaaagcgaaggttaagtcactcgtggaaattctcgtgaagaaatgcggtttagat
gcggtgaaggctgtgatgcccgaagaacatatgaaattgctgaccaatatcagaaagatt
aatgagcggaaaatgcgcaagggaaattcgtctgaggatggggaggccatgtcgctgacc
tcacgagctacaaggcaaagtgggtggaatcacacacagatgttttcagattttggaagt
gatgaggatgactctaatggtgccttttccaagcagcataccgttacttctcgtcaagga
tcaaaagcttcaacacggtataaccggaagcgccaagataagaacttaatggaaaagttc
attgaccactcgaccggcgagcccctggatttacttgatcagaagacaatgaggctggct
ctcaaatcgacagtgccaggaagaaagagggctgcacccgatgacgatgacgatgagatg
gagttggaccctgaaggtcgtataattgtgcgtgacgaacatgaaagacgtaaaaagaag
cccgtctcccatgacgacgagcctgatgacaagagctccgtcagaagccagtcgatgaag
aggaggaaaacggcagactccggttggtcctacactggccatgattataccagcaagaag
gccggtggtgatctgaagaagaaagacaagatggaaccatatgcttactggccactagat
cggaagctgctcaaccgcaggtcggaccgcaaggcgtctgcgcgcaagggcatggccagt
gtcatgaagatgacgaaaaggcttgaagggaagagcgcttctggtgtccttgcagctaag
aaggcgcaaaaacgcaaacagaaaaagaacaagtaa
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