Brachypodium distachyon (stiff brome): 100822322
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Entry
100822322 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100822322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100822322
03009 Ribosome biogenesis [BR:
bdi03009
]
100822322
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100822322
Spliceosome [BR:
bdi03041
]
Complex A
U1 snRNP components
U1 related factors
100822322
Complex B
100822322
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100822322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
MAGSP
Motif
Other DBs
NCBI-GeneID:
100822322
NCBI-ProteinID:
XP_003566767
UniProt:
I1HNG4
LinkDB
All DBs
Position
2:40836532..40841489
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AA seq
828 aa
AA seq
DB search
MAGTAAPRYAPDDPTLPKPWRGLVDGTTGYLYYWNPDTNITQYEKPLLPEDQLPPPPPLP
PPPPRSRGRRDRSRSRSRDRRDRSRSRSRSRTPPRRDHRDRDRDRRRHDEHNSSKQASSY
HQLPPVVPTAAPDDPSAEAYRRRHEITVIGDNVPAPITAFDSGVIPSDILKEIQRAGFPS
PTPIQAQSWPIALQNQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNSTRSGPTVLVLAPTR
ELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGRLNDILEMRKI
SLKQVSYLVLDEADRMLDMGFEPQIRKIVKDIPSSRQTLMYTATWPKEVRRIADELLVHP
VQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSGSKILIFCTTKRMCDQLS
RTLNRHFGAAAIHGDKSQNEREKVLSQFRSGRSPILVATDVAARGLDIKDIRVVINYDFP
TGVEDYVHRIGRTGRAGATGLAYTFLCDQDAKYAADLIKILEGADQDVPRELMDMVSRGG
RGRKRNKWATRSERGGGSRSELDSSRYSGRLESSRSGRGKDDYSGRGRHDYGGSDGRSRR
SGRGRSRSRSRSDSDRRSPSPKRRRHDGLKSRSRTRSRSRSRSRSRSRSYTRNRRASRSR
SRSPAARHRTERRDGSATARPDSGHRVEHKTSPRVHPSNDHTKHSGSPKVHPSNDHTNHS
DQKDDYHLEDGKMGKVDLDRSPSPQDDKSAPYSPVYSKGKDSMSPIGQPVVEAKAVEVSQ
KPDPASPPHRSKNRDDEEEGIIDEEGEEGMIADDDPRASAAVQNGGEK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaccgccgccccacggtacgcgccggatgacccgacgctgccgaagccgtgg
cgcgggctggtcgacggcaccaccggctacctctactactggaacccggacaccaacatc
acccagtacgagaagcccctgctccccgaagatcagctgccgccgccgccgccgcttcct
cctccgcctccgcgctcccgcggccgccgggaccgttcccgctctcgttcccgcgaccgc
cgggaccgttcccgatcccgatcccgctcccgcaccccgcctcgccgcgaccacagggac
cgcgaccgcgaccgccggcgccacgacgaacacaactcctccaagcaggcgtcctcctac
caccaacttcctccggtcgtccctaccgccgcacccgacgatccgtccgccgaggcatac
cgccgtcgccacgagatcaccgtcatcggggataacgtgcctgctccaataactgcgttt
gattctggtgtcatcccgtccgatatactcaaggagatacaacgtgctggattcccaagt
ccgacaccaatccaagcccagtcatggccaattgccctgcagaatcaagatgttgtagct
attgcaaagacaggatctggaaaaactcttggttatttgcttcctggatttatgcatatt
aagcgtctgcagaacagcacaaggtccggccctacagtgttagttttggcgcctaccaga
gagcttgcgacacagattttggaagaagctgtgaaatttggcagatcatccagaatttct
agcacgtgcctttacggtggcgcccctaaaggtccccagttaagagatttagaaagaggg
gttgatgttgttgttgcaacacctggaaggctgaacgacattctggaaatgcggaagata
agcctaaagcaggtttcataccttgttctagatgaggctgaccgcatgttggacatgggg
tttgaaccacaaataagaaagatagtgaaagacataccttctagtcggcaaactcttatg
tacactgctacttggcctaaggaagtccgtagaatagcggatgagcttcttgttcaccct
gtccaagtgaccattggaagtgttgatgagcttgttgctaataaagctattactcagcat
gtggaggtgatcactccctcagagaagcttcgacgtttggagcaaatactgcgatcccat
gattcaggttcaaagatactaatattctgtacaaccaagagaatgtgtgaccaactctca
aggacactcaataggcattttggagctgctgccattcatggtgacaagtcccaaaatgaa
agagagaaggttctgagtcaatttcgatctggacggtctcctattttggtggcaacagac
gttgcggcacgagggttagacatcaaagatatcagggttgtgatcaactatgacttcccc
actggtgttgaagattatgttcacaggattggcaggacaggcagggctggtgccactggt
ttggcctatacatttttatgtgatcaagatgcaaaatatgctgctgatcttattaaaatt
ctggaaggggcagatcaagatgttcctcgtgaactaatggacatggtttctcggggtggg
cgtggtaggaagcgcaacaaatgggcaactcgctccgaaaggggtggtggttcacgctct
gaactggattcatcaaggtatagtgggagattagagagcagtcgcagtggccgtggaaag
gatgattacagtggccgtggcaggcatgattatggtggatcggatggacgatcgcgcagg
tctggtagaggtcgcagcagaagccgtagcaggagtgatagtgatagacgcagcccaagt
cctaagaggcgccgccatgacgggctgaagagtcgtagcaggactagaagtaggagccga
agcaggagcagaagcagaagcaggagttacactaggaaccgccgtgctagccgcagcagg
agtcgtagccctgctgctagacatcggactgaaagaagagatggttctgcaactgcacgt
cctgactctgggcaccgtgtggagcacaaaacctcacccagagttcatccctcaaatgac
catacaaagcactctggctcacccaaagttcacccttcaaatgaccatacaaaccattct
gaccagaaagatgactatcacctggaggatgggaagatggggaaggttgatcttgatcgc
tcccccagtccacaggatgacaagtctgctccatatagtcctgtgtatagcaaaggcaag
gactcaatgagccctattggtcagccagtggtggaagccaaagctgttgaggtctctcag
aagcctgatcccgcatcaccacctcatcgcagcaagaacagagatgatgaagaggaaggc
attatagatgaagagggagaggaaggtatgatagctgatgatgatcctcgggcaagtgca
gctgtgcaaaacggtggtgagaagtga
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