Brachypodium distachyon (stiff brome): 100822667
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Entry
100822667 CDS
T01717
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100822667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100822667
03041 Spliceosome [BR:
bdi03041
]
100822667
03009 Ribosome biogenesis [BR:
bdi03009
]
100822667
03016 Transfer RNA biogenesis [BR:
bdi03016
]
100822667
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100822667
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100822667
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100822667
Complex C
U4/U6.U5 tri-SnRNP related factors
100822667
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100822667
Transfer RNA biogenesis [BR:
bdi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100822667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
AAA_26
Motif
Other DBs
NCBI-GeneID:
100822667
NCBI-ProteinID:
XP_003557276
UniProt:
I1H222
LinkDB
All DBs
Position
1:50759033..50765044
Genome browser
AA seq
993 aa
AA seq
DB search
METLKRKAPEVPAARANSPTKAPRDDDAPAAPAASEPVACVHDVSYPEGYDASTSSRIVA
GGGEGVAPAKTFPFKLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYVIAMSLRNQQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVMR
EVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPC
HIVYTDYRPTPLQHYVFPSGGDGLYLVVDENGKFREDSFQKSLNVLAPASGGDKKRENGK
RQKGISAGKPGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKV
NIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKC
LFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDDRGICILM
VDDKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQMRCEDGDPEKLLRHSFYQFQADRAL
PDLEKRVRELEIERNSMVIDEEESLKDYYDLLEQYKTLKKDVRDIVLSPKYVLPFLQSGR
LVRVQFSTDEQPTFSIDENVTWGIIINFEKVKTQAEDRKPEDCDYAVDILTRCSVNKDIS
GKKTMKIIPLKDRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVEEVISRF
AKDGIPLLDPEEDMEVKSSSYRKATRRIEALESLFEKHDVRNSPHIQQRLKIFHAKKEIS
AKIKSIKKTMRASTALAFKDELKARKRVLRRLGYITSEDVVEVKGKVACEISSADELTLT
ELMFSGALKDATVEQMVALLSCFVWQEKLQDAPKPRDELDLLFYQLQETARRVANLQLEC
KIQIDVETFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVLQQLIL
ASKSIGETELEAKLEEAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctcaagcgcaaggctccggaagtacccgccgcccgggccaactcacctacc
aaggcgccgcgggacgacgacgcccccgccgcaccggccgcctccgagcccgtcgcctgc
gtgcacgatgtctcctacccggaaggctacgacgcctccacctcctcgcggatcgtcgcc
ggcggcggcgagggcgtagcgccagcaaagacgttccctttcaagctcgaccctttccag
tccgaggccatccggtgcctcgacaacggcgagtccgtcatggtttcggctcacacgtca
gcagggaagacggtggttgcgctgtacgtgatagcaatgtctctacgcaaccagcagcgg
gtcatctacacgtccccgatcaaggccctcagcaaccaaaagtacagggaattcaaggag
gagttctccgatgtcggtctcatgaccggagatgtcacgattgagcccaatgcctcttgt
ttggtcatgaccacggagatctggcgcagcatgcagtacaaagggtccgaggtcatgagg
gaagtcgcttgggttatatttgacgaggtccattacatgcgcgatagggagagaggagtt
gtgtgggaggagagtatagtaatggctcccaagaactcgcgctttgtgttcctctcagca
actgtaccaaacgccaaggaatttgctgattgggttgccaaggtacataagcaaccgtgt
catatagtatacaccgactatcgacctacacctctccagcactatgtatttccttctgga
ggtgatggcttatacctggtagttgatgaaaatggcaagttcagagaggacagtttccag
aaatctttgaatgtccttgcccctgctagtggcggtgacaagaagagggaaaatgggaag
cggcaaaaagggatatcggcaggcaaacctggtgaggagagcgacatattcaagatggtg
aaaatgataattcagcgtcaatatgaccctgtgatacttttcagctttagtaaaagagag
tgtgaatttcttgctatgcagatggccaagatggacttgaatgaggatgatgagaaagta
aacattgaaacaattttttggagtgccatggatttgctgtcagatgatgacaaaaagctt
cctcaggtttcaaatatgcttccgttattgaaacgcggcattggtgtgcatcattctggc
ctattgcccattttgaaggaggtgatcgagatacttttccaggagggcctcatcaagtgt
ctgtttgccacagaaacattcagtattggattgaacatgcctgcaaagactgttgtgttt
accaatgtacggaaatttgatggggatcgattcagatggttgtcaagtggagagtacatc
cagatgagcggccgtgctggtcgtcgaggtattgatgaccgtggtatctgcatattgatg
gtagatgacaaaatggaaccgtcaactgccaaaatgatgctaaaaggaggtgctgatagt
ttgaacagtgcctttcatctgagctacaacatgttattaaatcaaatgcgctgtgaggat
ggtgatccagaaaagcttcttcgacattcattctaccaattccaagcagatcgagctctc
ccggaccttgagaagcgagtcagggaactggaaatagagagaaattccatggttattgat
gaagaggagagcttgaaggactactatgatctcctagaacagtacaaaactttaaagaag
gatgtacgtgatattgtactttccccaaaatatgttttgcctttcttgcaatctggaagg
cttgttcgtgttcagttcagtacagatgagcaacccaccttctccattgatgaaaatgtc
acatggggaattataataaactttgaaaaggtgaagacccaagctgaagacagaaaacct
gaggattgtgattacgctgttgatatcctcaccagatgttctgtaaacaaggacataagt
ggaaagaagaccatgaagattattcctctcaaagaccgtggagagcctgttgttatttcg
ttgccactttcccagatcgatggactgagcagtgttcggatgtacatacctaaggatctt
ttgcctgtagaagctcgagaaaataccttgaggaaagtcgaagaagtgatttccaggttt
gctaaagatgggattcccctattggatccagaagaagatatggaagtaaaatcaagctcc
taccggaaagccaccagaagaatagaagctctggagagcttatttgagaagcatgacgtc
cgtaattctccccatatccaacaaaggcttaagatctttcatgctaagaaagaaatatct
gccaaaataaagtccatcaagaaaaccatgcgggcttcaactgctctagccttcaaggat
gagcttaaggcccggaaacgagttcttcgtaggctgggatacatcacaagtgaggatgtt
gttgaagtgaagggcaaagtggcatgtgagatcagctcagctgacgaactaacattgaca
gagcttatgttcagcggtgctttgaaggatgctaccgtagagcagatggtggctctgctc
tcttgctttgtttggcaggaaaagctccaggatgcaccaaagcctagggatgagctcgac
ttgctcttttaccagctgcaggagacggcacgtagggttgctaaccttcagctcgaatgc
aagatccagatcgatgtggagactttcgtgaattcgttccgaccagatgtaatggaagcc
gtgtattcatgggccagagggtccaagttccaccagatcatggagatgacccaggtgttt
gaaggcagcttgatcagggccatcaggaggctggaggaggtcctgcagcagctgatcctg
gcatccaagtcgatcggcgagaccgagctagaagcgaagctagaggaagctgttagcaag
attaagagggacatcgtgtttgcggcatctctgtacttgtaa
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