Brachypodium distachyon (stiff brome): 100822897
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Entry
100822897 CDS
T01717
Name
(RefSeq) polygalacturonase ADPG1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Module
bdi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100822897
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
100822897
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
100822897
NCBI-ProteinID:
XP_003559271
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Position
1:complement(3096332..3097857)
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AA seq
407 aa
AA seq
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MASIMTKLVCSALIVLFLLSRSNASSVNTSVEFSIDNYGARGDGKHDDTEALAKAWTAAC
SSSRPAVLLVPKGKTYLLKSITLSGPCKSNLVFMVKGTLAAPRSLSDWSEENRRHWIVLH
GINGLTVTGGGTINGNGELWWKNSCKTNKARPCKQAPTALTFHLCSNLTVENLKIVNSQQ
INMSVEDCSDVQLARLSITAPGTSPNTDGIHITRSKDVQVRDCVIRTGDDCMSIEDGTHN
LHVTKVVCGPGHGISIGSLGDDNSRAEVSGIYIDTVQLYGTTNGARIKTYQGGSGYAKDI
VFQNIIMDNVQNPIIIDQNYCDSAKPCKNQESAVEISNVVFKNIRGTTMSKDAIKLDCSN
SDSCTDIVLENIDLKMEGGNGETQSTCQNAKWRKSGNVTPQPCEFKN
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgatcatgaccaagctcgtatgttcggccctgatcgtgttgttcttgctttcc
aggagcaacgccagctcggtcaacacctcagtcgagttcagcatcgacaactacggcgcc
cgtggcgacgggaagcacgacgacacggaggcactggccaaggcatggaccgccgcctgc
tcctcttcacgccccgccgtcctgctcgttcccaagggcaagacctacctgctcaagtcc
atcactctctctggcccatgcaaatcaaacctcgtcttcatggtgaagggtactctggct
gctccccggagcctgtcggactggagcgaggaaaacaggaggcactggatcgtgctccat
gggatcaatggccttacagtcaccggtggtggcaccatcaatggcaacggcgagctctgg
tggaagaactcgtgcaagaccaacaaggctcggccatgcaagcaggctcccacggctctc
acatttcacctgtgcagcaatttgacggtcgagaacctgaaaatcgtcaacagccaacag
atcaatatgtctgtcgaggactgcagcgacgtgcaattggcccgtctctccatcacggca
cctggcacgagcccaaacaccgatggcatccacatcacccgcagcaaagatgtgcaagtg
agagattgtgtcatcaggaccggggatgactgcatgtcgatcgaagatggaactcataat
cttcatgtcacgaaagttgtgtgtggtccgggccacggaatcagcatcggaagcttagga
gatgataactccagagccgaggtttctggtatttacatcgacacggtacagttatatggc
acgaccaacggagcccgcatcaagacatatcaaggaggaagcggatacgctaaggatatc
gtattccagaacatcatcatggacaacgtgcaaaacccaattattattgaccagaactac
tgcgactcggctaaaccatgcaagaaccaagagtcggcggtggagattagcaacgtggtc
ttcaagaacatcagggggacaaccatgtccaaagacgccatcaagttggactgcagcaat
agtgactcctgcaccgacattgtcttggagaacatcgacctgaaaatggagggtggcaat
ggtgagacacaaagcacctgccagaacgcaaaatggaggaaatcaggaaatgtcactcca
caaccttgtgaattcaagaactaa
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