Brachypodium distachyon (stiff brome): 100823621
Help
Entry
100823621 CDS
T01717
Name
(RefSeq) THO complex subunit 4B isoform X1
KO
K12881
THO complex subunit 4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100823621
09122 Translation
03013 Nucleocytoplasmic transport
100823621
03015 mRNA surveillance pathway
100823621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100823621
03041 Spliceosome [BR:
bdi03041
]
100823621
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100823621
TREX complex
100823621
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100823621
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100823621
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RBD_DEAH11
RRM_10
Motif
Other DBs
NCBI-GeneID:
100823621
NCBI-ProteinID:
XP_010237990
LinkDB
All DBs
Position
4
Genome browser
AA seq
211 aa
AA seq
DB search
MAGSLDMSLDDLITKNKPHLRRGRARRNHEGRGGPTRSARRFHSRAAAAPYHHRQLNFHQ
QVQAPPAYGFVARPMAMVEEDAPTRLYISNLDYNVSNEDIKDLFSELGEVMRYSINYDKS
GRSKGTAEVVFSTRSAARAAVNKYNNVHLDGKPMKIEVVGTNIEAPAAPAIFAFAAPPAG
NFSFPPKSEICSGAGRGGGRGWPRRRGGRGH
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggcgggctccctggacatgtccctcgacgatctcatcaccaagaacaagccccacctc
cggcgtggccgcgcccgccgcaaccatgaagggcgaggaggccccacgcgctcagcccgc
cgcttccactcccgtgccgccgccgcgccctaccaccaccgccagctcaacttccaccaa
caggtacaggcgccgccggcttacggattcgtcgcccggccgatggccatggtggaggag
gacgcccccaccaggctctacatctccaacctcgactacaacgtctccaatgaggacatc
aaggatctcttttcagagctgggtgaggtcatgcgctactccattaactacgacaagagt
ggaagatcaaagggaactgcagaggtggtgttttcaacaaggtcggctgctcgagctgct
gttaacaagtataacaatgtgcaccttgatggcaagcctatgaaaatcgaggtcgtcggg
acaaacattgaggcaccagcagcacctgccatctttgctttcgccgcaccacccgctgga
aacttcagtttccctcccaaaagtgaaatttgcagtggagctggaaggggcggcggccga
ggatggcctcgccgcagaggtgggcgcggccattag
DBGET
integrated database retrieval system
