Brachypodium distachyon (stiff brome): 100824084
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Entry
100824084 CDS
T01717
Name
(RefSeq) uncharacterized protein LOC100824084
KO
K14315
nucleoporin NDC1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100824084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100824084
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100824084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
100824084
NCBI-ProteinID:
XP_003570112
UniProt:
I1ICP2
LinkDB
All DBs
Position
3:52659051..52663320
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AA seq
503 aa
AA seq
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MDRAPPRGATRDAVGQRWLAVFAFQAALSAAASVVHLAASPRRRHPRLGVPPALLLALHP
LLSCAATGLLALAFLISASPHPRPPPVPLRALAASFLAAAGALFVGAAASLVPEDAGWAA
VAGLGFRGAVFGAVFAAHYFGRGRWLLQFPVVQRPLFYGLKMGLLPSIKRALKVSIQAFC
LSLALTFILPRQFRIGGTIGGQIITQISIFVLTTGVSFCWEISHHFVQVVHTRRCSFTPP
QSTAAAETNPTDYILETLELSDPRSLMQYLAFQDLCAVSECNLEPWRRAAFFEESGETYK
RIVTACLKPLEEFTSKIAEALEGFSSDKPELLSQQSKLFGAFNDSQICSLCARTLAALTA
RSRREDRYGVAQLTGCNAAVMSTLLSVLVAVEACLGKKTNPQPVHSLGPASIRWANFSTG
KKGNATAIASTQRGGLHTKAYLMADVLRTSIYQMVSAFLDDMRANAKASSLEKNWISEGR
KPIFGSQAVLVQKLSLFIEYRAV
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggacagggcaccgccgcgcggcgcaacccgcgacgccgtgggccagcggtggctcgcc
gtcttcgccttccaggccgcgctctcggccgccgcctccgttgtccacctcgctgcctcg
ccgcgacgccgccaccctcgcctcggggtgcccccggccctcctactcgcgctgcacccg
ctcctctcctgcgccgccacgggactcctcgcgctcgccttcctcatctccgcgtcgccc
cacccgcgcccaccaccggtaccactgcgcgccctcgcggcgtccttcctcgctgctgct
ggcgcgctcttcgtgggcgccgcggcgtcgctggtccccgaggacgccggctgggctgcc
gtcgcggggctgggattccgcggcgccgtgttcggcgccgtgttcgctgctcactacttt
gggcgtgggaggtggttgctccagttccccgtcgtgcagcgacctctattctacggatta
aagatggggcttctgccatccataaaaagggctctaaaggtgtcgattcaggctttctgc
ctttcacttgcccttacttttattcttcctcggcaattcagaattggaggaaccattgga
ggccaaattatcacccaaatcagtatttttgtattgaccactggtgtttccttctgttgg
gaaataagccatcattttgtccaggttgtgcatacaagaaggtgcagttttactccacct
cagagcactgctgctgcagagactaatcctactgattatatccttgaaacgttggaacta
agtgatccacgatcgttgatgcaatatctagcattccaagatttgtgtgcggtatctgaa
tgtaacttggaaccttggcgtcgagctgccttctttgaggaatctggtgaaacttataaa
agaattgtcacagcctgtttgaagccacttgaggaattcacttcaaaaattgctgaagct
ctcgaagggttttctagtgataagccagaactgctgtcacaacaatccaagctctttggg
gcatttaatgattcacagatatgctcattgtgtgctcggacattggcggcactaactgca
cgctcacggcgagaggatcggtatggagttgctcaactcactggctgcaacgctgctgtg
atgtctactttgctgtctgtgctagtggcagttgaggcgtgtttaggaaagaaaactaac
ccacaacctgtgcactcactgggtccagcaagcattaggtgggctaacttctccacggga
aaaaaaggcaatgcaactgcaattgcaagcacgcaaagaggtggtctgcacacaaaagct
tatttgatggctgatgtcctccggacttcaatttatcaaatggtttctgcctttctggat
gacatgcgggcaaatgcaaaagcatcaagtttggagaagaattggatcagtgaaggaaga
aaacctatatttggttcacaggctgtgttggttcagaagttgagcctgtttattgaatat
cgtgctgtctga
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