| Entry |
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
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| KO |
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| Organism |
bdi Brachypodium distachyon (stiff brome)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:bdi00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100824230
09124 Replication and repair
03420 Nucleotide excision repair
100824230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:bdi03021]
100824230
03036 Chromosome and associated proteins [BR:bdi03036]
100824230
03400 DNA repair and recombination proteins [BR:bdi03400]
100824230
Enzymes [BR:bdi01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100824230
Transcription machinery [BR:bdi03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100824230
Chromosome and associated proteins [BR:bdi03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100824230
DNA repair and recombination proteins [BR:bdi03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100824230
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:complement(74870912..74876948)
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| AA seq |
752 aa
MWFDLDGLPVCFPYDAIYPEQHEYMGELKRALDARGHALLEMPTGTGKTAALISLITSYA
LANPSRPLRLFYCTRTVHEMEKTLAELRLLFSHLPPADACRLLALGLSSRKNLCVHPQVS
ASGAVDTGCRRLTASWVCEKAAYDRESATPLCDYFETFDAAARKGDLALYIQPGVYTLAD
LRSLGRERRICPYFLARHMVKHANVVVYSYQYLLDPRVASIVSSEMQKDCVVVFDEVHNI
DNVCIEALSVSIRKQTIQGAKGNLRHISQQIDRFKATDASRLNAEYRRLVDGLAQRGNLP
ISDAWLANLALPDDILKEAVPGNIRKAEHFLTVLWRLVRNLDERVDTENVVNERPVSFAT
SIYSLAGIETTTLRFLYDRLQSLLLTLEITDTDEFMHIQKICDFATLIGTYKRGFSIIIE
PYDDRMPDIRDPVIQLSCHDASLAIQPVFNRFQTVVITSGTLSPIDLYPRLLNFNPVISR
SFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFF
VSYSYMDGIVSSWNDMGILQEIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSV
ARGKVVEGIDFNRHYGRLVIMFGVPFQYTLSKILRARLEYLRETSQIQEGDFLTFDALRQ
AAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWIRSHLHDAHLNLSTDMALHTARE
FLRRMAQPYDKAGSSGQTEENLQDKARDAMEM |
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| NT seq |
2259 nt +upstreamnt +downstreamnt
atgtggttcgatctggatggcctgccggtgtgcttcccgtacgacgcgatctacccggag
cagcacgagtacatgggggagctgaagcgcgccctggacgcccgcggccacgcgctgctg
gagatgccgacgggcaccggcaagacggcggcgctcatctcgctcatcacctcctacgcc
ctcgccaacccctcccgcccgctccgcctcttctactgcacccgtaccgtccacgagatg
gagaagaccctagccgagctacgcctcctcttctcccacctcccgcccgccgacgcgtgc
cgcctactcgcgctcggcctatcctcccgcaagaacctttgcgtccacccacaggtgtcg
gcatccggtgccgttgacaccggctgcagacgcctcaccgcgtcctgggtctgcgagaag
gccgcctacgaccgggaatccgccaccccgctctgcgactacttcgagaccttcgacgcc
gcagcccgcaaaggcgacctcgccttgtacattcagcccggggtctacaccctcgcagac
ctccgctcgctcggccgcgagcgccggatatgcccctacttcctcgccaggcacatggtc
aagcacgccaatgtcgtcgtctacagctaccagtacctgctcgaccccagggtggccagc
atcgtctcctcggagatgcaaaaggactgtgtggttgtcttcgatgaggtgcataacatc
gacaacgtctgcattgaggcgctgagcgtcagcattcgcaagcagacgatacaaggtgcc
aagggaaacctgcggcacatctcgcaacagattgataggttcaaggccaccgatgccagt
aggcttaatgcggaatacaggaggcttgtggatggattggcacaaaggggaaatctgcca
atatcggatgcctggcttgcaaatctagccttgcctgatgacattctcaaggaagccgta
cctggaaatatcagaaaagctgagcattttctcactgtcttgtggagacttgtgaggaac
ttagatgaacgggttgatacagaaaatgttgtgaatgaaaggcctgtttcctttgctact
tcaatctattctctcgctggaattgagacgacaacgctgaggtttttgtatgaccgctta
cagtctctattgcttaccctggagataaccgatacagatgaattcatgcacatccaaaaa
atttgtgacttcgccacactgattggaacttataaacggggtttttctataataattgaa
ccctatgatgatagaatgcctgacattcgtgatcctgtgattcagctcagttgccatgat
gcttcactcgcaatacagcctgttttcaatcgttttcaaactgttgtcatcacttcagga
actctcagcccaatcgatctgtatcctcgtcttttgaattttaatcctgttataagcagg
agcttcacaatgtccctaacaagggattgcatatgtcccatggtattgacacgaggaagt
gatcagctacctgtgagtacgaagttcgacatgcgcagtgatcctggtgttgtgaggaat
tatggccgcctcttgctagaaatggcttctgctgtgccagatgggatagtctgtttcttt
gtcagttactcctatatggatggcattgtcagcagctggaacgacatgggaattttacag
gaaatcatgcagcacaagttggtattcattgaaacaccagatgttgttgagacaacattg
gctcttgataattacagaaaagcatgcgattgtggaagaggtgcagtcttcttctcagtt
gccaggggcaaagttgtggaaggtattgatttcaatcgacactatggaagacttgtgatc
atgtttggtgttccattccagtacacactcagcaagatattgcgtgctaggttggagtac
ctaagagaaacttctcagatacaggagggtgacttcctgacatttgacgcattgaggcaa
gctgctcaatgtgttggccgggtgattcgttcgaaagcagattatggaatgatgatattt
gctgacaagagatacagtcggcatgataaacggtctaaattgccagggtggatacggtca
cacttgcacgatgcacacctaaatctgagcaccgacatggctctgcatactgcccgtgag
ttcctacggaggatggcgcagccgtatgacaaggcggggagcagcgggcagactgaggag
aacttgcaggacaaggctcgggacgccatggagatgtga |
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