Brachypodium distachyon (stiff brome): 100824555
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Entry
100824555 CDS
T01717
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100824555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100824555
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100824555
mRNA degradation factors
5'-3' decay
Lsm complex
100824555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
100824555
NCBI-ProteinID:
XP_003579826
UniProt:
I1IY34
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Position
5:complement(14767010..14770784)
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AA seq
128 aa
AA seq
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MSWAGPDEMLLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEL
YCDVPLGLYVIRGENVVLIGELDREKDELPSHMTCVSEADIRTAEKAEKEARDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggccgggcccgacgagatgctcctctccacctccctggctggcttcttagac
aagaaacttattgtcctactacgagatggacgaaagctacttggcacgctctgctcattt
gatcagtttgcaaatgttgttcttcagggtgcatgtgaacgagtaattgtaggagaatta
tattgtgatgttcctcttggtctgtatgtgatccggggagagaatgttgtattaattgga
gaattggatcgtgagaaggacgaactccctagtcacatgacttgcgtctcagaggctgat
ataagaacggctgagaaagcagaaaaggaagcaagagatctgaaaggcacgatgaggaag
aggatggagttcctagactttgattaa
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