Brachypodium distachyon (stiff brome): 100824836
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Entry
100824836 CDS
T01717
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100824836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100824836
03009 Ribosome biogenesis [BR:
bdi03009
]
100824836
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100824836
Spliceosome [BR:
bdi03041
]
Complex A
U2 snRNP components
U2 related factors
100824836
Complex B
100824836
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100824836
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
Helicases
100824836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
TrwB_AAD_bind
PhoH
Motif
Other DBs
NCBI-GeneID:
100824836
NCBI-ProteinID:
XP_010228700
UniProt:
I1H646
LinkDB
All DBs
Position
1:complement(63604974..63608629)
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AA seq
719 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAGVNGAAAAANPSINKWNGRPYSARYLEILEKRR
TLPVWQQKEEFLRALRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYKVI
VLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNMGD
QVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVI
DPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDLHPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTS
LGEMMSEFPLDPQMSKMLVISPRYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKNADNVRQQLVRIMTRFNLRMCS
TDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYN
EYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPTCEAKRVLERLHNKRERERAASRN
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggtcgacgagacatccgta
tccgccaagctcggccgcgccggcgtcaacggcgccgccgccgcggctaacccgtccatc
aacaagtggaacgggcggccctactcggcgcggtacctagagatcctcgagaagcgccgc
acgctccccgtgtggcagcagaaggaagagtttctccgcgccctccgcgacaatcagacc
ctcatcctcgtcggagaaaccggaagtggcaagaccactcagatcccccaatttgtgctc
gaggctgaaggtttgagcaaccgctctatggttgcctgcacccagcctcggagggttgct
gcgatgtcggtctctcggcgcgttgcagaggagatggatgttacaatcggggaggaagtt
ggttacagtatccgatttgaagattgcagcagtcacaaaactgttctcaaatatttgaca
gatggtatgcttctgagagaagcaatggcagacccacttttagagaggtacaaggtgatt
gttcttgatgaggcccatgagcgcacgttggcaaccgatgttctgtttgggcttctgaag
gaagttctgaagaataggcctgacttgaagcttgttgttatgagtgcaacgcttgaggca
gagaaatttcagggttatttcagtagtgctccgttgatgaaggttcctggtagacttcat
ccggttgagattttctatacgcaggaaccagaaagggactatctagaagctgctatcagg
actgttgtgcagatacatatgtgtgaacctgctggcgatatccttgtattccttacaggt
gaagaagagattgaggatgcctgtcggaaaattaataaggaagttaataacatgggagat
caggtcggcccagttaaagtcgtgccattgtactctactctaccccctgcaatgcagcag
aagatttttgaacctgctccagctccattgaaagaggggggtcctcctggaaggaaaatt
gttgtgtcaacaaacatagcagagacatcgctgaccatcgatggtatagtgtatgtgata
gatccagggttttccaaacagaaggtttacaatccaaggataagggtggaatcacttctg
gtgtctccaatttcaaaggcaagtgcacatcagagagctggtcgtgctggaagaacacag
ccagggaagtgcttcaggttatacacagagaagagtttcaatgatgatttacacccgcag
acttacccagaaattcttcgttcaaacctagcaaatacggttcttactttgaagaagctt
gggattgatgatttagtgcattttgacttcatggatcctcctgcaccggaaactctcatg
agagccttggaggttctgaactacttgggggcactcgatgatgaaggcaacctgacatct
ttaggtgaaatgatgagtgagttccccttagatccacaaatgtcaaagatgcttgtcatc
agtccaagatacaactgttcaaatgagattctctcgatatctgccatgctgtcagtaccc
aattgctttctgcggcctagggaggcacaaaaggctgctgatgaggcgaaggctcggttt
gggcacattgatggggatcatctgacacttctgaacgtgtaccatgcatacaagcaaaac
aatgaggatcctacatggtgttatgagaattttgtcaacgcccgagcgatgaagaatgcc
gataatgttagacaacagcttgttcgcatcatgaccagattcaacctcaggatgtgcagt
acagacttcaatagtcgtgagtactacgtcaatatcaggaaagctatgctttcagggtac
tttatgcaggttgctcacctggagcgaactgggcattacttgactgttaaagataatcag
gttgtccatcttcacccctcaaattgtatggaccataagccagagtgggtcatctacaat
gagtatgttttgaccaccaggaatttcatccgcacagtgactgatatccgtggagaatgg
ctgatcgatatagctccacagtattatgatctgaccaatttcccaacatgtgaggcgaaa
cgtgtccttgagaggctgcataacaagcgggagagggaaagagctgctagtagaaactga
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integrated database retrieval system
