Brachypodium distachyon (stiff brome): 100824868
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Entry
100824868 CDS
T01717
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100824868
03015 mRNA surveillance pathway
100824868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100824868
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100824868
mRNA cycle factors
P-body specific factors
100824868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100824868
NCBI-ProteinID:
XP_010240152
UniProt:
I1IZS8
LinkDB
All DBs
Position
5:complement(19605123..19619356)
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AA seq
1192 aa
AA seq
DB search
MDYMENESHEEKKQDEEEHHNKQANEEARLEEYKKLIDVKAALRQSNLNPERPDASYLRT
LDSSIKRNTAVIKKLRTITNEQKDGLMEELKSVNLSKFVSEAVSYICEAKPRSADIQATV
QICSLLHQRYKDFSPCLVQGLLKAFFPGKSGDCLALDKNSRAMKKRSTLKLLMELYFVGI
VDDATTFINIVKDLTSVEHLKDRETTQTNLSLLASFARQGKHFLGLQKHGQEASDEFFVG
LSVTDDVKSFFKKALSSYYDATTVVLQSEHASLRVMESENSKILNAKGELSDENTALYEK
LRKSFDQLLHCVSSLAEALDMQPPVMPDDGHTTRVTTGTDLSPTGKESSTVESIWDDEDT
KAFYESLPDLRVFVPGVLLGEAEPKLVDQHGKVHEQTSESTLEHGNEVQDNAETSVPEHQ
LEVKANIISKNREDKEKVDKGKSKEKDAGRKEDIESDKVRVTDGASLDNLLQRLPRCVSR
DLIDQLTVEFCYLNSKANRKKLVRTLFNVPRTSLELLPYYSRLVATLSKCMKDLPSMLLP
MIEEEFNFLINKKDQIKIETKIRNIRFIGELCKFKIAPSGLVFSCLKACLDDFSHHNIDV
ACNLLETCGRFLYLSQGTTIRMSNMLEILRRLKNVKNLDPHHSTLVENAYYLCKPPERSA
RVSKVRPPLHQYIRKLLFSDLDKTSVQHVLRQLRKLPWAECEQYLVKCFLKVHKGKYSQV
HLIALLTAGLSHYHDGFPVAVIDEVLEEIRVGLELNDYAMQQRRLAHMRFLGELYNYEHI
DSSVIFETLNLIIVFGCGTVEQDVLDPPEDCFRIRMIITLLQTCGHYFDRGSAKRKLDRF
LLYFQRYVLNKGPLSLDVEFDVQDMFAELRPNMTRYSSTEMLDSVLAELEENEHGSSAEK
GGCERDSDNRPQMKQSESAAFDANCKRLVNRPNKNGRDHEAAADSESHSGRGSVYRDGHE
DENFLYEEKSDDMSEIGVDNDYGCMLVGSDEESFQVRHKVVQVDPKEQEDFDRELKALVQ
ESLESRKSELRAKPTLNMTVPMNACDGSKDPKATGAESGQEITAEESGSAGSGSKVKVCV
RVLVKKGHRQQTKQMLIPGDCSLVQSTKQQEAALHQEKQNIKQKILEYNEREEEESKGEP
LQTGYWGQGASSTGSSIRSAGCGAWDGANRGGGNRQRCYIAGGIYHGYGRGR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggattacatggagaatgagagccacgaggaaaaaaagcaagatgaagaggaacatcat
aacaagcaagctaatgaggaggcccgtcttgaagaatataagaagcttattgatgtaaag
gctgctctccgccagagtaacctaaaccctgagaggcctgatgcaagttacctgagaact
ctcgattccagcattaagcgcaacacagcagttatcaagaagctcagaactataaccaat
gaacaaaaggatggattaatggaagaattgaaaagtgttaacttaagcaaatttgtcagt
gaagcagtttcctacatttgtgaggccaaaccccgttctgctgatatacaagctactgtt
cagatttgctcgctgcttcatcaacgatacaaggacttctctccttgccttgttcaagga
ctcctgaaagccttctttcctgggaaatctggcgattgtctggctttagataaaaactca
agggccatgaagaagagaagcacgctaaaacttcttatggaattatattttgttggaatt
gttgatgatgctactacttttataaacatcgtaaaggatcttacgtcagtggagcatttg
aaggaccgtgaaacaacacagacaaatttgtctctccttgctagttttgcccgccaagga
aaacatttccttggattgcaaaaacatgggcaagaagcttctgatgagttttttgtaggc
ctcagcgttacagatgatgttaaaagtttctttaagaaagccttgagctcttactatgat
gccacaactgtagttctccagtcggaacatgcgtctcttcgtgtaatggagtccgaaaat
tcaaagattttaaatgccaaaggcgaactaagtgatgagaatactgctttgtatgagaag
cttcggaaatctttcgatcagttattgcactgtgtttcatccttagctgaagctcttgat
atgcagcctcctgttatgccagatgatggacatacaacaagggtaactacagggactgac
ttatcccctactgggaaagaatcttctactgtagaatctatctgggatgatgaagacacg
aaggcattttatgaatctttgcctgatctcagagtatttgtgcctggtgtgctattggga
gaagctgaaccaaagttggtggatcagcatgggaaggttcatgaacaaactagtgagtct
acattggaacatggaaatgaagttcaagacaatgctgaaacttctgttcctgaacatcaa
ttggaggtaaaagcaaatatcatctccaagaatagagaagacaaagagaaagtagataaa
ggaaaatctaaagaaaaagatgctggcagaaaagaagatattgaaagtgacaaagtaaga
gtcactgatggcgcaagtttagacaacctgcttcagaggctgccaagatgtgttagtcga
gatcttattgatcaattgacggtagagttttgctatctgaattctaaagcaaacagaaag
aaacttgtgaggaccttattcaatgttccaaggacttcgttggaactgttaccttactat
tcccgtttagttgccactttgtccaaatgcatgaaggatctcccaagtatgctcttgccc
atgattgaagaagagtttaactttttgataaataagaaggatcaaatcaaaatcgaaaca
aaaattagaaacattagatttattggcgagttgtgcaaattcaaaattgcaccttcaggc
cttgtttttagctgtttgaaggcatgcttagatgattttagccatcataacattgacgtg
gcctgcaatcttcttgagacctgtgggcgctttctttatctctcacaagggactacaatt
cgcatgtcaaacatgctggaaatactgaggcggttgaaaaatgtcaagaatttggatcca
caccacagcacacttgtagagaatgcttattacttatgcaaacctccagaaagatctgcc
agagtctctaaagttcgcccacctttgcaccagtacataaggaagctgcttttctcagat
cttgacaaaacaagtgttcagcatgttcttcgccagttacgaaagttaccttgggcagag
tgtgagcagtacctggtgaagtgttttctcaaggttcacaagggaaagtatagccaagtt
catctgattgctcttctgacggctggtcttagtcactatcatgatggttttcctgtggct
gtgattgatgaggttctagaggagattagagttggacttgagctgaatgactatgcgatg
caacaacggcgacttgcccacatgcgattccttggggagctatataactatgagcatatc
gattcatcagttatctttgagacactgaaccttattattgtatttggttgtggaacagtt
gaacaagatgtgcttgatcctccagaagattgtttcaggattaggatgatcattacactt
ctccagacttgtggccactattttgatagaggatctgcaaaaagaaagcttgacagattt
ttgctatattttcaaagatatgttcttaacaaagggccattatcacttgacgttgagttt
gatgttcaggatatgtttgctgagctacgacctaacatgacaaggtattcatctacagaa
atgttagattctgttctggctgagcttgaagaaaatgagcatggttcctcagcggagaaa
ggtggatgtgaaagggactcagacaacagacctcagatgaaacaatctgaaagtgctgct
tttgatgccaactgcaagagattagtaaacagacctaacaaaaatggcagggatcatgaa
gcagcagcagacagcgaaagccattcaggtagaggaagcgtctatcgagatggacatgaa
gatgaaaattttctgtatgaagagaaatcagatgacatgtcggagattggagttgacaat
gactatggttgcatgcttgttggttctgatgaagaaagttttcaggttaggcataaggtg
gtgcaagttgatcccaaggagcaagaagactttgaccgggagctgaaagccctcgtacag
gaaagcttggagtcacgtaaatcagagctacgggccaagcccactttgaacatgaccgta
ccgatgaatgcctgtgacgggtcaaaggacccaaaggccactggagcagagagtggacaa
gaaattacagctgaggaaagtggcagtgctgggagtggtagtaaggtcaaggtgtgtgtc
agggtgcttgtgaagaaagggcacaggcagcagacaaaacaaatgctcattcctggagac
tgctcgcttgttcagagcacaaagcagcaagaggcagctctgcaccaggagaagcaaaac
attaagcagaaaattcttgaatacaacgaaagggaggaggaagaatctaaaggagagcca
ttgcaaactgggtactggggtcaaggagctagcagcacaggcagcagtatcaggtctgct
gggtgtggtgcctgggatggtgcaaacagaggcggaggcaatcggcagcggtgctacatc
gcaggtgggatctaccatggttatggcagggggaggtga
DBGET
integrated database retrieval system
