Brachypodium distachyon (stiff brome): 100825422
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Entry
100825422 CDS
T01717
Name
(RefSeq) nuclear-pore anchor isoform X1
KO
K09291
nucleoprotein TPR
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100825422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100825422
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100825422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
100825422
NCBI-ProteinID:
XP_010236134
LinkDB
All DBs
Position
3:58502061..58525110
Genome browser
AA seq
2070 aa
AA seq
DB search
MPLFMSDEELRLLGGDVAAVAERADAAIREYRNQVDTVRAEADAAAIAAEQTCALLEQRF
ATLSADADRYQAEATELAAASERRAADLASSQAEIHQLRIQAIAKDGEVERLKVEISELH
KSKCQSLELIQQRDAEIREKDGVIQSYHDKIVNQADSSAGKEARIQEVEAKLTHCQATCN
RIAQEKELLQKHNLWLDEELKAKVKNLADLRKANMEEESRMSAKIAELEREVSESSSSLR
RSKEQSSELEQRVTYMEKELFSAKDAAAANEQRLGAELSTVMKLAELHKESSEEWSKKAG
ELEGVIKALETHLTQVEDDYKEKLEKETLAKSDLEKEVANLKQKIQKCESDLENSRKSGE
LSLIPLTSMAADPAALADTQLREMPLSDALNQNDLMIVPSVPTGVSGTALAASLLRDGWS
LAKIYEKYQEATDALRHERWGRRHAEAVLERVLHEIEEKAELILDERAEHERMIEAYALM
DHKLQQALLEHDNFENTIRNLKSELKRRERDHTIANKEIDDLQKQVAVLLKECQDIQLRC
GSSLPNVGHGALSTSINNGLSIVENNSHEHMTFNDINGLVQQNVQLRNKVHLLSTDLDKK
DMELRESFQIELKRITDGATSRVEKVMKKSEEQAIMIESLHRSVAMYRKLCEEQQKTRSN
VEHISNNLQDDGRKDLMVLFEGSQDVSKKAYEQVSERSKRLDEELTKLRTELVSLRSERD
KSVLEAKFAQDRLNGYMTENDHQRKEANSVSLRNAELMHLIVDYEKRLRESSDSMQALEE
NSRKLSMEVSILKHEKEIVVKSERRSLDEVHDLTERVHRLQGTIDTIHTTEEVQENARSM
ERRNQQEYIKRLERDWAELKKEVQEQRDHVRVLTLDKQNAFDGCMKQVEDMRKELQSSWK
ACTDAESRAAVAEVKCADLEAKLKSKMIIFRDGGRDNSSATEENDELFRQKEELEKYKDE
AHANKSYMLQYKEIANSNEAALKQMETAYQDYKRESEVAKRSLEDEIAKLRSKLSEMDKS
YVMKCEEAANAIEAKEKDITALMSDISILRNELSQKVARIENLEIESASSKSALDEQCKR
WRSAQDNYERQVILQSETIQELTNTSKQLSSLQQEVTILRQTADAQKAENDALRTFGEQE
KVQLLKEKDEALRKYTELNDQNRILHNRLEALHIRLAEQERGIAGLSSQRTDSHGEDDLH
GVVSYLRRSKEIAETEILLLKQEKSRLQIELESALKSAKEAHEVLRSQADSARSSMFKDE
EFKSLQLQVREINLLRESNIQLREENRHNFEECQKFREEAHKAIREAERLHDILQEKQVA
SEIGAKELELQKSEIVNLNQRISELVENSRGVDLSTYETMKDELQNIKSTLRENSIELER
AKTLLSEREVVIRNLEEKLAGCQSELAVKEKKLNEVEASLKSEMERLKRINFAIKKKLEI
STKEKENATKENNSLLKQIEDLKSTGQKTTSETANDQVVKEKESRIQTLEKILERERDDN
RKEKSSRKKAESVFLGALQNLSKEKKQIEDSIEKHRQAVKEAIEHYSGQSSQIPSGSAVE
EQFRSYFLAAKRIEESSSPFKDGSVNQTSLIDTPTVDAAATGRPVVTPANPAQVKGVEER
AVSTSSKPSTERRLRRPLVRPTLERVEEPQADTDTPITEGSTVAQEKGSLSLGRGSTVNQ
EKGGPSLERGSTIVQEKGGRLLERGLGQDKVGLSLERETSGGVSVPSSRKRLISLSQGRD
DAPQGEASDSNPPSKKPKEEFFHGTSEQKNDQSASEDVTAQAPVDPSMDNQDAQQPADEM
DTDQASMPIEEVEDTRDGDVGVNDDMEERTDASTGIKDQYTEVHIDSGATAVEDMPVKSE
AVEESFDEDQKLDDAKEEGQITTATDVEEEREEGELPEESEQHSDSSPPDIGEQAADSFR
VASPGGLTEKSDTDMAEEVGEGETAEHGTVEADQSPLAQSGGADASPGRNTDVSPAREPS
PSNPPHDGASSEQQIPATAIDTGETQNPTLNFERARQTRQARFGRTTSPQSATNRGRPRT
PIVFPKDTGSGSQKEAARGSRGRRGRGGGR
NT seq
6213 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcttcatgtccgacgaggagctccggctcctcggcggggacgtggccgcggtc
gccgagcgggccgacgctgccatccgcgagtaccggaaccaggtggacaccgtccgcgcc
gaggccgacgcggcggccatcgcggccgagcagacctgcgctctcctcgagcagcgcttc
gccaccctctccgcggacgccgatcgctaccaggccgaggccaccgagctcgcggcggcc
tccgagcgtcgcgctgctgacctcgcttcctcccaggccgagatacaccagctccgcatc
caagccattgcgaaggatggcgaggttgagcgtctcaaggtagaaatctcggagctgcac
aagtccaagtgccagtcgctagaactgatccagcagagggacgcagagataagggagaag
gatggcgtcatccagagctaccatgataagatagtaaatcaggccgactcttctgctggc
aaagaagctaggatacaagaggttgaagctaagttaacccactgtcaggccacatgtaac
cgcatagcacaggagaaggagcttcttcaaaagcataatctctggcttgatgaggaactg
aaagcaaaagttaagaacttagcggatttaaggaaagcaaatatggaagaggagtctagg
atgtctgcaaagatcgcagagcttgagagagaggtttctgaatcttcaagttccttgaga
cgaagtaaagaacagagttctgaactggagcaaagagttacctatatggaaaaggagttg
ttctccgcaaaggatgctgcagctgctaatgaacaacgccttggtgctgagctttcaact
gtcatgaaacttgctgaacttcataaagaaagttctgaggagtggtcaaagaaggctggg
gaacttgaaggtgttattaaagcattagagacacatttgacccaagttgaagatgactac
aaggaaaagcttgagaaggagaccttggccaagagtgatcttgaaaaggaagttgccaac
ttaaagcagaagattcaaaagtgtgaatctgatttggaaaattcaagaaagtccggggaa
ttgagcctcattccgttgactagtatggcagcagaccccgctgctttagcagatacacaa
ttgagagagatgccactttctgatgctttgaatcaaaatgacctgatgatagttccgagt
gtacccactggtgtttccggaactgcattagctgcttctcttcttcgggatggttggagt
cttgctaagatatacgagaaatatcaagaagctactgatgctttacgtcatgagagatgg
ggaaggagacatgctgaagcagttctggaaagggtcttgcatgaaatagaagagaaagct
gagcttattttagatgaacgagctgaacatgagaggatgattgaagcttatgctctaatg
gatcacaaattgcagcaggcattgttggagcatgataatttcgaaaatacaataagaaat
ctaaagtcggagttaaaaaggcgggagcgtgatcatactatcgctaacaaggaaatagac
gacttgcagaaacaagtcgctgttcttttaaaggagtgccaagacatacagcttcgttgt
ggttctagccttccaaatgtaggtcatggtgctctttctacgagcatcaataatggcttg
tctattgttgaaaacaacagtcatgagcatatgacatttaatgatattaatgggcttgtt
cagcaaaatgttcaacttcgaaataaagttcacttgctttctactgatcttgacaaaaaa
gacatggagctcagggagagcttccagattgagctgaagagaatcacagatggtgctacc
tccagagttgaaaaagtgatgaagaagtctgaagaacaagcaataatgattgaatctctt
catagatctgtagcgatgtataggaaattgtgtgaagagcagcagaagactcgctccaat
gtcgaacacatatccaataatttgcaagatgatggcagaaaggacctgatggttctattt
gaaggatcacaggatgtctcaaagaaagcatatgaacaggtttctgagcgatccaaaaga
cttgacgaggagctgacaaagttgaggaccgagcttgtgtctctgcgatctgagcgtgat
aagtcagttcttgaagctaaatttgctcaagatcggcttaatgggtacatgacagagaat
gatcatcagaggaaggaagctaattctgtttcactcagaaacgcggagttgatgcacttg
atagtcgattacgaaaagaggcttcgtgaaagttcagattctatgcaagctttagaggag
aattcaaggaaactgtcgatggaggtgtctattctaaagcatgaaaaagagatagtagta
aagtcagagagaagatctttggatgaagtccatgatttgactgaaagggtgcatcgtctg
cagggtaccattgacacaatacataccactgaggaggttcaagagaatgcaaggtctatg
gaaaggagaaatcaacaggagtatatcaagcgactagagagagactgggcagaactcaag
aaggaggttcaagaacaacgagatcatgttcgtgtcctgacacttgataagcaaaatgcc
ttcgatggctgcatgaagcaggtagaggatatgagaaaagagttacagagctcatggaaa
gcttgtactgacgctgaatctagggctgctgttgcagaggtcaagtgtgctgatttggag
gcgaagctcaaatcgaaaatgatcatttttagggatggtggtcgcgataactcatcagca
actgaggagaatgatgagctgttccggcagaaagaggagttggaaaaatacaaggatgaa
gcacatgcaaacaaaagctacatgcttcagtacaaggaaattgcgaactcaaatgaagca
gcattgaagcaaatggaaactgcatatcaggattacaaaagagagtctgaggttgctaaa
agaagcttggaagatgagattgccaagttgaggagtaagttatctgaaatggacaagagc
tatgtcatgaagtgtgaagaagctgccaatgctattgaagctaaagagaaggatatcact
gctctaatgagcgacatttctattctgagaaatgaactttcccagaaagtggctcggatt
gagaatttagaaattgaatctgcttcatcaaagagtgctcttgatgagcagtgtaagcgt
tggcgtagcgcacaagacaattacgagcgtcaggttatcctgcaatctgaaacaatacag
gagctgacgaatacttctaagcaactatcttcattgcagcaggaagtcacgatacttcgt
caaacagcagacgcacaaaaggctgaaaatgatgctctaagaacgtttggtgagcaagaa
aaggtacaattgctaaaagaaaaggacgaggctctccggaagtacaccgagctaaatgat
cagaatagaattttgcacaatcgactagaagccttgcacattcgactagctgaacaagaa
cggggcattgccgggctttcatcgcaacgtactgactcacatggagaggatgatttacat
ggtgttgtcagctacctccgcagatcgaaagaaatagcggaaacagagatattgttgctt
aagcaggagaaatctcggcttcagatagaattggaaagtgcgttgaagtccgccaaggag
gcacatgaggtactccgcagtcaagctgacagtgcaagatcatcaatgttcaaggacgaa
gagttcaagtcactgcagctccaggtgagagaaattaatttgcttcgtgaaagtaacata
caacttagagaggagaacagacacaattttgaagaatgccagaaattccgtgaggaagct
cacaaggctataagggaggcagaaaggctgcatgatattttacaggagaagcaagtagct
tctgaaatcggtgcaaaagaactagaattgcagaaatctgaaatagtaaatctcaaccaa
aggatttctgagttggttgaaaatagtagaggagttgatttgagcacatatgagaccatg
aaggacgaacttcaaaatatcaaatcgaccttgcgagagaattcaattgagcttgagcgt
gcaaaaactcttctttccgagagggaagttgtcataagaaatttagaggagaagcttgct
ggatgtcagtctgaattggcagtcaaggaaaagaagctgaacgaagttgaggctagcttg
aaatcggaaatggaaagactgaaaaggataaattttgccatcaagaaaaaacttgagata
tcgacgaaggagaaggagaatgctaccaaagaaaataacagtcttttgaagcagattgaa
gatcttaaatcaacaggtcagaaaactacatcggaaactgctaatgatcaggttgtaaag
gaaaaggaatccaggatacagacactggaaaaaatcttggagagggagagagacgataac
aggaaagaaaagtcaagccgcaaaaaggccgagagtgtatttcttggtgcccttcaaaat
ctatcaaaggagaagaaacaaatagaggattcaattgagaagcataggcaggctgtgaag
gaggctattgagcattattccggacaatcttctcaaatcccatccggttctgcagtagag
gagcagtttcgttcatatttccttgctgctaaaaggatcgaggagtctagtagccctttc
aaagatggttcagtgaatcagacatcacttattgatactcccactgtggatgcagctgcc
acagggcggccggtagtgactccagcaaatcctgcccaagttaaaggggtggaggagaga
gcagtttctacttcgtccaaaccaagtactgagcgaaggttaagaaggccactcgttcgg
ccaactcttgagcgggttgaagagccccaggctgatacagatacaccaattactgaaggt
tccacagtagctcaggagaaaggtagcctgtcactgggtcgaggttcgacagtaaatcag
gagaaaggtggtccgtcactggagcgaggttccactatagttcaggagaaaggtggccgg
ttgctggagcgaggtttaggtcaggataaagtcggcctgtcacttgagcgtgaaacttct
ggtggtgtgtctgtaccttctagtcgcaaacgtctcatatcattgtcgcaggggagagat
gatgctccacagggagaggctagtgattcaaatcctccatcaaagaaacccaaagaagag
tttttccatggtaccagtgagcagaaaaatgatcaatcagcttcagaagatgtaacagct
caggcccctgtagatccatctatggataaccaagatgcgcaacagcctgccgatgagatg
gacacagatcaggcctccatgccaattgaagaggttgaggacaccagggatggcgatgtg
ggtgttaatgacgacatggaagaacgtacagatgcgtctacaggcattaaggaccagtat
actgaagttcatattgacagtggtgcaactgcagttgaagatatgccggtcaaatcagag
gcggtagaggaatcatttgacgaagaccagaaacttgacgatgcgaaggaagagggccag
ataactacagcaacagatgttgaagaagagagggaagagggagagttgccggaggaatca
gaacaacattcagacagtagtcccccggatattggtgaacaagcagctgattctttcagg
gtggcatctcccggagggttgacagaaaagagcgacacagatatggcagaggaggttgga
gaaggtgagactgctgaacatggtacggtggaagctgaccaaagccctctagcacaatca
ggtggagcagatgcctcaccaggcagaaatacagatgtatcccctgcacgtgaaccttcc
ccttctaacccacctcatgatggcgcatcttccgaacagcagattccagctactgcaata
gatactggggaaacacaaaacccaacactcaatttcgagagagcaaggcaaaccaggcaa
gccaggtttggccgcacaacctccccgcaatctgccaccaacaggggtcgtccgagaact
cctattgtcttcccgaaagatactggttcaggatcacagaaagaggctgctcgcggatct
cggggacgtcgtgggcgtggtggtggccggtag
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integrated database retrieval system
