KEGG   Brachypodium distachyon (stiff brome): 100825545
Entry
100825545         CDS       T01717                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100825545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100825545
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100825545
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100825545
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 SPACA9
Other DBs
NCBI-GeneID: 100825545
NCBI-ProteinID: XP_010238829
UniProt: I1IV91
LinkDB
Position
4:complement(48196158..48210548)
AA seq 1954 aa
MEEDQSAVLVAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCES
CGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIKKGKAKQSNGKENVS
VTACSYCRDVPALSLKEVKTADGAFRLELRAPPRRLMKDSSWNFLDKYGFHHGGASHFRT
LLPEEALNILKKIPDDTRKKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SISLLKKILHRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIHLRGTTKGPQDTKRFTI
STDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGLPSEVAKRITFEEQV
TDINIKRLQEVVDKGLCLTYRDGQTTYAITVGSKGYTTLKVGQTISRRIVDGDVVFLNRP
PSTHKHSLQAFYVYIHDDHTVKINPLICSPLAADFDGDCVHIYYPQSLAAKAEALELFSV
EKQLTNSHNGKVNLQLSNDSLLALKHMSSRTVLSKESANQLAMLLSFSLPDPAVVKLKPC
WTITQIIQGALPAALTCEGGRFLVKDSTVIKLDLAKESVQASFSDLVSSILCVKGPGGAL
QFLNALQPLLMEYLLLDGFSVSLQDFNVPKVLLEEVHKSIQEQSLVLEQSRCSKSQFVEM
RVDNNLKDVKQQISDFVVESSHLGLLIDPKSEPSMSKVVQQLGFVGLQLYREGKFYSSRL
VEDCFSSFVDKHPPIVGNQHPPEAYGLVQNSYFHGLNPYEELVHSISTREAIVRSSRGLT
EPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNEDDATDIPSALTPGEPVGVLAA
TAISNPAYKAVLDASQSNNTSWASMKEILQTKVSYKNDTNDRKVILFLNDCSCPKKFCKE
KAAIAVQNRLKRVTLEDCATDICIEYHKQILDGSSEATPALVGHIHLEKARLDMINVSTE
DILQKCQEVSLKHGKKKGHLGHLFKKITFSTCDCSFTQKPMIDGKLPKVPCLQFSFSEDI
PMLSESVERAVSVLANSLCDVLLDTIIKGDPRIQEAKIMWVGSDAQSWVKNTRKVSKGEP
TVEIVVEKNEASKQGDAWRIAMDACIPVIDLIDTRRSIPYGIQQVRELLGISCSFDQIVQ
RLSTTMKTVAKGILKDHLILVANSMTCTGNLYGFNTGGYRATFRALKVQVPFTESTLFTP
MKCFEKAAEKCHSDALGCVVSSCSWGKHAALGTGSSFQILWNENQLKSNKEYGDGLYDFL
AMVRTDQEKARYTFLDDVDYLVEDNAMDDICLSPELNGTHGVPTFEDNFEHQDTQNGNSW
ENGTKANASWEQNASAGNDSDNWGGWSNAAAAADTGAAKPADQGNSSWDVPATAENDSTD
WGGWGNEKAKDNRTVSTEPAELDTWSDRGAKKGTDGGGGSWGKQTNTCEDSGTNLERNSW
AKRPSSPSLSTWAKKNSDGGDGTWDKQANSCKKNVEQDSWKNMPVSPARNAWNKKESSRG
DATWEMRASTLEEKKTSESNEGSWEKSNAQKDSWGNTQHGSSDKMAVKDNDMQQDPWGHI
ATQNINAQDDLWGSVAAKAQTSTAENTDAQDDSWGAVAAKAQTSTAQESWGNVAASPSDN
AWKAPPISQTSAAEHTDAHNDSWGIVAAKAQTSTAQQESWGNATASPSDNAWNAAPMDLD
AKQPGSWDGWSSALAEDSNKADDSSNKNKGWKSDGWGAKGNRRDQRDNPSMPPMRPDERP
PRPRFEVPAEAKKILREIEPIVSMVRKIFRESCDGVRLPLEDEKFIKESILEHHPEKERK
VPGEIDHIMVNKHHIFQESRCFYVVLADGTHTDFSYNKCMDNYVRKTYTDAAEHADLVSQ
MYFKKRDRDRAAAVDGGSTPANASQSTQVMETSQDEAPQEAQPETCVATQEETRVSPQET
PAATTQQEETENNPDSASEADYHSASEAGLPEGV
NT seq 5865 nt   +upstreamnt  +downstreamnt
atggaggaggaccagtcggcagtactggtcgctgaaggtgccatcaagagcatcaagctt
agcctatccactgaggatgagatacttacatactcaataaatgactgtcctgttacccat
cctagtcagcttgggaatcctttccttggcttaccactggaaacgggcaaatgtgagtca
tgtggtgcctcggagaacggcaaatgcgaagggcattttggatacattgagctgcctgta
cctatatatcatccgtgtcatgttagtgaacttaggcaattattgagcttagtatgtctg
aagtgccttcgaatcaagaaaggaaaggctaaacaaagcaatggaaaggaaaatgtgtca
gtaacagcatgctcctactgtcgggatgttcccgcactatctttgaaggaagtcaagaca
gcggatggtgcatttcgtttagagctaagagcacccccaaggagactcatgaaggatagt
tcctggaacttccttgacaaatacggatttcaccatggtggagcctcccactttaggaca
ttgcttccagaagaggctctgaacatactaaagaagattccggatgacacgcggaaaaag
ctagctgcacggggatacattgctcagtctggatatgtgatgaaatatcttccagtacct
cctaactgcctctacattccagaattcacagatgggcagagcatcatgtcctatgacatc
tctatatctttattgaaaaagatacttcacaggatagagcagataaaaaaatcaagagct
ggtaccccaaacttcgaatcacatgaagctgaatcgagtgatttacaaatttctattgcc
caatatatacatctaaggggtactacaaagggtcctcaagacacaaagagattcacaatt
agcactgattcatctcatttatcaacaaaacaatggctggaaaagatgaggacattattc
atcagcaaagggtcaggtttttcatcgcgcagtgtacttaccggagatccctatattgga
gtagatgtagttggattgccttccgaagtggcaaaaagaataacatttgaagagcaggtt
acggacatcaacatcaaaaggttgcaagaggttgttgacaagggactgtgtttgacctat
agagatggtcaaacaacatacgccatcactgtgggatccaaagggtataccacactcaaa
gtgggtcaaacgatcagtagaaggatcgttgatggcgatgttgttttccttaacaggcca
cctagtactcacaagcattccctccaggcattttatgtttacatccacgatgaccacaca
gtcaaaatcaatcccctcatatgctctcctctcgcagcagattttgatggtgattgtgtg
catatttactatccacaatcgcttgctgcaaaagctgaagcgttggagcttttcagcgtg
gagaaacaactgacgaattcacacaatgggaaagtaaatctccagctatctaatgacagt
ttgctagccctgaagcatatgtcttccagaaccgttttaagcaaagaatcagctaaccag
ttggcaatgcttctgtcattttctcttcccgatcctgctgtggtcaaattgaaaccatgc
tggactattacgcaaataatacaaggtgcgctgccagcagcattaacttgtgaaggaggc
agattcctagtcaaggacagcactgtcataaaactggatcttgccaaagaatctgttcaa
gcctcattctcggatttagtatcttccattctgtgtgtgaagggtccaggaggtgcgctc
caatttctgaatgcattgcagcccctgttgatggaatatttacttttggatggttttagt
gtaagcctgcaagattttaacgtacccaaggttcttttggaagaagtacataaaagcatt
caagaacagtcccttgtacttgagcagtcaaggtgctcaaaaagtcagtttgtggaaatg
cgagttgacaacaatctgaaggatgtcaaacagcaaatttcagattttgttgtggaatcc
tctcatcttgggcttctgattgatccaaagagtgaaccttcaatgtcaaaagttgtccag
cagcttggttttgttggtctgcagctttaccgtgagggaaagttttactcaagccgtctg
gttgaggattgtttctcgagttttgtggataaacacccacctattgttggaaatcagcat
cctccagaggcttatggtcttgtgcaaaattcatatttccacggtctcaatccttatgaa
gagctggtacattctatatctacaagagaagctattgtccgctcctcaagagggctgaca
gaaccaggaactctgttcaagaatctaatggccatcttgcgagatgtagttatatgttat
gatggaacagtgagaaacatctgcagcaattcaatcatgcaacttaagtacaatgaagat
gatgccacagatattccaagcgcattaactcctggagaaccagtaggtgtcttagctgcc
actgctatctccaaccctgcatacaaggctgtcttggatgcttctcagagcaacaatact
tcttgggcatcgatgaaggaaatactacagacaaaagttagctataaaaacgatacgaat
gatcgaaaagttatcctgtttttgaatgactgctcttgccccaagaagttttgcaaagaa
aaggctgctattgcagtacagaaccgcctaaagagagtcacattagaggactgcgctact
gatatctgcattgagtatcacaaacagattttagatggatcttcagaagccaccccagca
cttgttggccatattcaccttgaaaaggcacgtttagacatgataaatgttagcactgaa
gacattcttcagaaatgccaagaagtttctctgaaacatgggaagaagaaaggacatctt
gggcacctgtttaaaaagatcactttctctacttgtgattgctccttcacacagaagcct
atgattgatgggaagctacctaaggttccatgtttgcagttctctttttctgaggacatt
cctatgttatctgaatctgttgagagagcagtgagtgtgttagccaattccctctgtgat
gtgcttttggatacaatcataaaaggtgatcctcgaattcaagaggctaaaattatgtgg
gttgggtcagatgcacaatcttgggtaaaaaacacaaggaaggtatctaagggtgagcca
acagtagaaattgttgttgaaaaaaatgaagcttcgaagcagggtgacgcatggagaata
gcaatggatgcctgtataccagtcatagacctcattgatacacgaaggtccataccttat
ggtattcagcaagtgcgagaacttcttggcatatcatgctcctttgatcaaattgtgcag
cgcctttcaacaactatgaagacggtcgctaaaggaattctcaaggaccatttgatactt
gtggcaaacagcatgacgtgcactggaaacttgtatgggttcaacactggtggttacagg
gcgactttccgtgcattaaaagttcaagtaccttttacagagtctaccttgtttactcct
atgaaatgctttgagaaggctgcggagaaatgtcattctgatgcattgggatgcgtggtc
tcatcatgctcatggggcaagcatgcagcacttggcactgggtcatcttttcagattctt
tggaacgaaaatcagctgaaaagcaataaggagtatggtgatggcctgtatgatttcctg
gccatggtgaggaccgatcaagaaaaggctaggtacacgttcttggatgatgtggattac
cttgttgaagacaatgcgatggatgatatctgcttatcgcctgaattgaatgggacccat
ggtgtgcccacttttgaagataacttcgaacatcaagatactcagaacggcaactcatgg
gagaatggcacaaaggcaaatgcaagctgggaacaaaatgcaagtgctgggaatgattct
gataactgggggggctggagtaatgcagcagcagcagctgacacaggagctgcaaaacca
gcagatcaaggcaattcatcttgggatgtgcctgcaacagcggagaacgattccactgac
tggggaggttggggcaatgaaaaggcaaaggacaataggactgtgtcaacagagccagct
gaactcgatacttggtctgatcggggtgctaaaaagggtacagatggaggtggtggtagc
tgggggaagcagacgaacacttgtgaggactctgggacaaatctggaacggaactcttgg
gccaagaggccatcatcgccatcactcagtacatgggccaaaaagaattcagatggaggt
gatggtacctgggacaagcaggccaactcttgcaagaaaaatgtggagcaggactcttgg
aaaaacatgccagtgtcaccggcaagaaatgcatggaataaaaaggagtccagcagaggt
gatgccacttgggagatgcgggctagcaccttggaagaaaagaagacaagtgagtcaaat
gaaggttcctgggagaaatctaatgcacaaaaggattcttggggtaatacacaacatggt
tcctcggacaaaatggcagtgaaggataacgatatgcagcaagacccatggggtcatatt
gcaactcagaatattaatgcacaggatgatctctgggggagtgtggcggctaaggctcag
acttctactgcagagaatacagatgcacaggatgattcttggggagctgtggcagcaaaa
gctcagacttctactgcacaggagtcatggggtaatgtggccgcttcaccgtcagacaat
gcatggaaagctcctccaatttcccagacttctgctgcagagcatacagatgcacataat
gattcttggggaattgtggcagcgaaagctcagacttctactgcacagcaagagtcctgg
ggtaatgcaactgcttcaccgtcagacaatgcatggaatgctgctccaatggatttggat
gcaaagcagccaggttcttgggatggatggagttctgctctagctgaggactcaaacaag
gcggatgattctagcaacaagaacaaaggctggaaatcagatggatggggtgccaaaggc
aaccgaagagaccaaagagacaatcccagcatgcccccaatgagacctgatgagaggccg
ccaaggccacggtttgaagtaccagctgaggccaaaaagattctacgagagattgaaccc
attgtatcaatggtcagaaagatcttccgtgaatcatgtgatggcgtaagacttccgctg
gaggatgaaaagtttatcaaagagagtattctagagcaccaccctgaaaaggaaaggaag
gttcctggtgaaattgatcatataatggttaacaagcaccacatattccaggaaagtcga
tgcttttatgtggtgttggcggatgggacccacacagatttttcatacaacaagtgcatg
gataactatgtgaggaagacctatacggacgctgccgagcacgccgacttggtcagccag
atgtatttcaagaagcgcgatcgtgatcgagcagctgctgttgatggaggttcaacacca
gccaacgcttctcagtctactcaggtgatggagacctcccaagacgaagctccacaggag
gctcagccagagacttgcgtggcaacccaggaagaaactcgagtgtctccacaagagact
cctgcagcgacgacccagcaagaagagacagaaaataatccagattcagcgtcagaggca
gattatcattcagcgtcggaggcagggcttcctgagggggtgtag

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