Brachypodium distachyon (stiff brome): 100825683
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Entry
100825683 CDS
T01717
Name
(RefSeq) transcription elongation factor SPT6-like isoform X3
KO
K11292
transcription elongation factor SPT6
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100825683
03036 Chromosome and associated proteins [BR:
bdi03036
]
100825683
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100825683
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
100825683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
SH2
Tex_central_region
HHH_9
Tex_N
HHH_3
Rrn6_HB
Motif
Other DBs
NCBI-GeneID:
100825683
NCBI-ProteinID:
XP_010230023
UniProt:
A0A2K2DRH0
LinkDB
All DBs
Position
1:53625473..53631951
Genome browser
AA seq
1441 aa
AA seq
DB search
MGGRTVESDEEDCSVEAYEEDQRPRRRDGDEDMEDRDNSDDEEEEGQDEYERDDFIVDDT
DEEEEEERVSDDERRKKKRKKKSEPAKLEEDEIRMLEENNGCIKHRNKLKRLRKAGSESE
MDGPSGFSGVDRAGKKATAEEKLEYSLFGDQDQPLEDVLEEDQQSEDDEVGEDYIDDEMA
GFIVDDDEEIGGNGQVVRSKKLKRKPLRQAVGISSSALQDAHDIFGDVDELLAQRKQDLQ
SDPANSGKLSGNMLEDEFEPAILADKYMTPKDDQIRATDVPERIQLSEELTDDPRRDNTR
IEEESVWIHSQLIGDGCLSFFGNERVNREINQEDIANVLTMLHVNKFEIPFIATYRKESC
PSLLKDHDANEHENEDGTKIIRWHKLLWAVQTLDRNWLLLQKRKNALKAYYEKRFDDEKQ
RIDDGLSNRQLCYSIIELLKDAKSEKEVEDVDAKFNLHFPPGEVRDFKRPKRKTLYSICR
KAGLWEVANQFGRSAEQLGHHLTLTRIPEAGELDGMKGSPEEVAANFTSAIFETPQDVLR
GARHMAAVEISCEPVVRKHIRSIFMNKAVVSTSPTPEGNLIKDSFHQLSSVKWLRNKPLN
KFVDAQWLLIQKAEEEKLLKVTVRLPEDVEEELMSEARENYLSDCVSKSAQMWDEQRKMI
LDNAFFSLLLPSMEKEARFMLTANAKNWLRMEYGKQFWNKISVAPWKKKDADTHLDQESE
LRVMACCWGPGKPATTFVMLDSSGELVDVLYAGYVSSRSQGAAEQQRKKDDQQRVLKFMT
DHQPHLVCLGASNLNCKQLKDDIYEVIFRIIEDHPRDVNQQMDNFSIFYCDEFVPRLYEN
SWVSSDQLPGQSGIVKRAVALGRYLQNPLAMVATLCGPGKEILSWKLHPLERFLTPDDKY
EIIEQAMMDATSQIGFDVNLAASHEWHFSTLQFVPGLGPRKASALQRELVRQGSILSRKE
LVNPLGRKVFMNASGFLRVRRSGAIAATTDVIDLLEDTRIHPESYALAKNLAKDVYAEDA
PSREANDGMDMDNDDQQEMAIEHVRERPQMLKALDIDEWMRSIPEEFNKRETLLDIKREL
LCGFSDWRTPYAEPIPDEEFWMLCGETEDSISDQRIVQVTVRNIQENRIICTFDSGLKAI
VTEDNYPDGAESLQLKEGDVLTGKIKNVNKNRFLVYLTCKASDMRTKPFSPSNQDPYYHE
QPDMMTSKNEKDKADKQKQIVKKYFKPRMIVHPNFQNLTAEEAMQLLSEKEPGDKVIRPS
SRGPSFLTLTLKFSDGVYAHKEIIESGKDQKDMTSLLRLGKTLTIDGETFEDLDEVIDRY
VDPLVYYLKSMLSHRKFRKGLKSEVDDMARAEKAENPRRIVYCFGMSHEHPGTFILSYIR
STNPHHEYLRLNPRGFRFRKRDFDSIDRLVSYFQKHIDRPPPDAGPSGRNVAAMVPMKNS
A
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgggtgggcgcacggtggaatctgacgaggaagattgctctgtggaggcctacgaggag
gatcagcgcccgcgtaggagagacggggacgaggatatggaagaccgggacaacagcgac
gatgaggaagaggagggccaggatgagtacgagagggatgacttcattgtggatgatact
gacgaggaggaagaggaagagagggtcagtgatgatgagagacggaagaagaaaaggaaa
aagaagagcgaaccagccaagcttgaggaggatgagatcaggatgctcgaggagaataat
ggctgcatcaagcatcgaaacaaacttaagcgcttgaggaaggcagggagcgaatctgaa
atggatggcccttcaggcttctcaggtgttgacagggcaggaaaaaaggcaactgccgag
gagaaacttgaatattccttgtttggtgatcaagatcagccccttgaggatgttctggag
gaggatcagcaatcagaggacgatgaggttggtgaagattacatcgacgatgaaatggca
ggtttcattgtagacgatgatgaagaaattggtgggaacggccaagttgtaagaagcaag
aagctcaaaagaaagccactacgacaagctgtaggaatatcatcatctgcattgcaagat
gcgcatgatatatttggtgatgttgatgagcttttagcacaaagaaagcaagatcttcag
agtgatcctgctaattctggcaagttgagcggcaacatgctcgaagatgagttcgagcca
gctattcttgcagataaatacatgacaccaaaagatgatcagattagagcaactgatgta
cctgagaggattcagctgtctgaagaattaactgacgatcctcgaagggacaacacaagg
atagaggaagaaagtgtatggatacacagccaactcattggtgatggatgtctgtccttt
tttggcaacgagcgagtgaacagagagattaaccaagaggacattgcgaatgtcttgacc
atgttacatgtgaacaaattcgaaattccgttcattgctacatataggaaggagagttgc
ccgagtctgctaaaggaccatgatgccaatgaacatgagaatgaagacgggacaaagata
ataaggtggcataagctgctttgggctgttcagaccttagacagaaactggcttctcctt
cagaagcgaaagaatgctttgaaggcgtactatgaaaaaagattcgatgatgagaaacaa
agaatagatgatggattatcaaatcggcaactttgctactctatcatcgaattattaaag
gatgcaaaatctgagaaagaggtggaggatgttgatgcgaaattcaatttacatttccct
cctggtgaagttagagactttaagcgaccaaaaaggaaaaccttgtacagtatttgccgc
aaggcagggttatgggaggttgctaaccaatttggccggagtgctgagcaattaggccat
catctaacgttaacgaggataccagaagctggcgagcttgacggcatgaaaggttcacct
gaagaggttgctgcaaatttcacaagtgctatttttgaaaccccgcaagatgttctccgg
ggcgccagacacatggcagcagttgagatcagttgtgagcctgttgtaagaaagcatatc
aggagcatcttcatgaataaagctgttgtctcaacaagccccacacctgagggaaatttg
atcaaagattcatttcaccaactatcaagcgttaagtggctgcgaaataaaccactaaac
aagtttgtagatgcacagtggcttcttattcagaaagcagaggaagaaaagctcctcaag
gttactgttagattaccagaggatgtggaggaagagcttatgtctgaggcacgtgagaac
tatctaagtgactgtgtcagcaagtctgcacaaatgtgggatgaacaacggaagatgata
ctggataacgccttcttcagtttacttcttccatcaatggaaaaagaagctcgatttatg
ttgacggcaaatgcgaaaaattggctccgtatggaatatggtaaacagttctggaacaag
atttctgttgctccttggaagaagaaggatgctgatactcatctggatcaggaatcagag
ttgagagttatggcttgctgctggggtcctgggaagccagcaaccacatttgtaatgtta
gactcatcaggagaattggttgatgttttatatgctggttatgtcagttctagatctcaa
ggtgctgctgagcagcagcgaaagaaggatgaccagcagcgagttttgaagtttatgact
gaccatcaaccacatcttgtatgtctaggagcatcaaacttgaattgcaaacaactcaag
gatgatatttatgaggttatttttagaattatagaagaccatccaagagatgtgaaccaa
cagatggacaatttcagcattttctactgtgatgaatttgttcctcgcttgtacgagaac
tcttgggtatcttcagatcagctgcctggccaatcaggtattgtgaagcgggctgtagcg
cttggtcggtacttgcagaacccattagcgatggttgcaacactctgtggacctggaaaa
gagatactgtcatggaaactacacccgctggaacgattccttactcctgatgataagtat
gaaattatcgagcaagcaatgatggatgcgacaagtcagataggtttcgatgttaatctt
gctgctagccatgagtggcatttctcaactttgcaattcgtacctggtctggggccacgt
aaagcttcggctttgcagagagagttggttagacaagggtccattcttagccgcaaggag
cttgtaaatcctctaggcaggaaagttttcatgaatgcttctgggtttttacgtgtccgg
cgaagcggtgcaattgcagctactactgatgtcattgatctgcttgaggacacaagaatc
catcctgaatcatatgcattggcaaagaatttggcgaaggatgtctatgccgaggatgca
ccatcgcgtgaagcgaatgatgggatggacatggacaacgatgatcagcaagagatggca
attgagcacgtaagggaaaggccacagatgctaaaagctcttgacattgacgaatggatg
agaagtattccagaagagttcaacaaaagggaaacgttgctcgacataaagagggaactc
ctgtgtggtttttctgattggaggaccccctatgctgagccaattccagacgaggaattc
tggatgctctgtggtgaaaccgaggacagcatatcagatcaaaggattgttcaagtgacc
gtccgtaatatacaagagaacagaattatttgcacctttgattctggcttaaaagccata
gttacggaggacaattatcctgatggtgcagaatcactgcagttaaaggaaggtgatgta
ttaactggcaaaattaagaatgtgaataaaaacaggttcctggtttacttaacatgcaag
gccagtgacatgaggacaaaaccattctccccaagtaaccaagatccgtactatcatgaa
caaccagacatgatgacttcgaagaacgagaaagataaggctgacaaacaaaaacaaatt
gtgaagaaatatttcaagccccggatgattgttcatcccaactttcagaacctgacagct
gaggaagcgatgcagttgttatcagagaaagagcctggcgacaaggtcattcggcccagt
tccagggggccatcgtttctaacactcaccctgaaattttctgatggcgtgtatgcacac
aaggagataattgaaagtggaaaggatcagaaagatatgacgagtttgcttcgccttgga
aagacactaaccattgatggtgaaacttttgaagatcttgatgaggtaatagacagatac
gtggatcctttggtatactacctgaaaagcatgctgtctcaccgcaaattcaggaagggg
ctgaaaagcgaggttgatgatatggcaagagcagagaaggcagaaaatcctaggagaata
gtttattgttttggcatgtctcatgaacatccaggcacctttatattatcctacattagg
agtacaaatccacatcacgagtaccttaggttaaacccaaggggcttcaggtttcggaag
agggacttcgacagtattgatcgcctcgtgtcatatttccagaagcatattgacaggccg
ccgccggacgctggtccatcagggcggaatgttgctgcaatggtgcctatgaagaattca
gcttag
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integrated database retrieval system
