Brachypodium distachyon (stiff brome): 100825699
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Entry
100825699 CDS
T01717
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bdi03009
]
100825699
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
Other 90S particles
100825699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
NRDE-2
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
100825699
NCBI-ProteinID:
XP_010227625
UniProt:
A0A0Q3K1F7
LinkDB
All DBs
Position
1:34524429..34543844
Genome browser
AA seq
1906 aa
AA seq
DB search
MAPHGDRKKGKAPARPSKPELRPNRKEFKNHRNEEVEKGGGGKQQEQEPEPHSAALFTAD
DDGAFPRGGRSLLSRDEMAEARTEADAEFEKEERRGAKKRKSNISIGIDADDDLGTLFGG
ATTGKLPRFANRITLKNISPNMKLWGVVIEVNQKDVIVSLPGGMRGFVRKDEVSDLALHG
NHKDSESSICAEVVHVGQLVPCVVLRVDDDKKEGKVNKRVWLSLRLTLIYKGLSLDGIQD
GMVLTAQVKSVEDHGYILYFGVSTFSGFMPKCDKETVKIESGQLVQCVVKAIDKARAIIH
LSCDEDLLSKSIIKDLKGLSIDHLIPGMMMNARVHTVLENGVMLSFLTYFTGTADIFNLS
NSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNQHLLRFEVPPVNVKVGEIYERSR
VLRMDKRAGLFLEIPSPTPSPGFVSIHDVSDKDVKKVEKKFKEGSITRVRVLGVRHLEGV
ALGTLKDSAFEGSVFTHADVKPGMVVRAKVVTVGPLEAIVQFAGGVKALCPLRHMSELDN
VVKPPKKFKVGAELLFRVLGCKSKRITVTYKKSLVKSKLEVLASYADAKIGLVTHGWITK
IEKHGCFVRFYNGVKGFVSRSELGLEPGTEAGSVYHVGQVVKCRIVSVVPASMKLNVSFA
TSSNRIIQADTAKVGTIVSAVVERLTPAAVVVSVNGFSKGSILDEHLADHHGQAAQLKNL
LKPGHEFNQLLVLDTEGQNLILSAKQSLINSANDIPSEISQMQAGAVVHGYICNIIEAGC
FVRFLGHLTGFSPKDKAVDIPMEKLSAAFFVGQSVRSHILNVNAESARLKLSLQQSVCSS
PDCSFMQGYFLLDQKIAEMKYSGSSTSHDWKKSLGIGSLVKGEVGAVEEYGVILNFKDHP
DVVGLIEHHQLGGSTVKVGSSVKGLIVDLSDGVVNLSLKPELIGSVSMDGKKKKRHRAAV
LDLELHEEVNAVVEIVKESYVVLSVPEYNHAIGFAPLMDYNSQLLPHHHYDNGQRITVVV
GSIPSSDPSGRLILLPKTSGQGSGLSSSRKAKKLSDKVGSLVEAEVIDIKPLELIVKFGV
NHHGRIHITEVLEDDCSEHPFSKLRIGQKIHARVVAQAEHSANSGRKLKWELSIRPSVLQ
GESKQLNALENKSNHSVNGIVRAYVVKVDREWVWLTVSRNVTAHLFILDSSVEPIELKEF
QQRYRVGQAVKGYIIGVNREKKLLRLKALDNQAMLKNIDDTQKPISSIAEHTKEGDIIGG
RIQKILPGVGGLLIQIGPHLHGRVHYTEIVDSWVPEPLSGFHEGQFVKCKVLAVSRPSEG
SVRVELSLRSSILCTSHDPSRKLVDDSATCTTRFENVNDLSPGSEVKGYVKNVNAKGCFI
MLSRMIEARIILSNLSDEYVENPQKDFSVGMLVHGRVLSAEPLSGKVEVSLRKGTGSKSQ
KSDGISYSDLHVGDIIDGQVKRVESYGLFVTIQSSELVGLCHVSELSDEPVLDINSCYKA
GDMVKAKILKIDEERRRVSLGMKKSYFVSGLTDGINDDDDDDERVPMDINHVPEMSSDLN
SALVVPEPEPRASVLPLQVSLDEYEGSDQDSDDKGPKIANGTGSIVQKSDKRLKEKARKQ
RELDISALEERALQKDIPKTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVEKARSVAER
ALRTINMREEEEKLNVWVAYFNLENEYGCPREDAVKKIFQRAMQYCDPKKVHLALLGMYE
RTDQHELADELFDRMTKRFKTSCKIWLRRIQFSLKQGRDVEYIKSIINRALLSLPQSKRI
KFLSQTAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTDVIRALFDRV
TCLSLPPKKMKFLFKKYLAYEKSQGDRERMELVMQKATEYAKISQA
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcacggtgataggaagaagggtaaggccccggcccgcccgagcaagccggaa
ctgcggcctaaccgcaaggaattcaaaaaccaccgaaatgaggaggttgagaaagggggt
ggtggaaagcagcaggagcaggagccggagccgcattctgcagcgctcttcaccgccgac
gacgacggtgccttcccgagaggaggacgcagcctcctgagcagggatgagatggcagag
gcgcgcacggaggcagatgcagagttcgagaaggaggagagaaggggggcgaagaagagg
aaatccaacatctctataggaattgacgctgatgatgatttggggacccttttcggtggt
gctaccactgggaagctcccacgctttgccaatcgcattaccttgaagaatatttcacca
aatatgaagctttggggtgttgtaattgaagttaaccaaaaagatgttatagtaagtcta
cctggtggaatgagagggtttgttcgcaaagacgaagtgtctgaccttgctctgcacgga
aatcacaaggatagtgagagcagtatatgtgctgaagttgtccatgttggtcagctcgta
ccttgtgtagttctacgagttgatgatgataagaaagaaggaaaagtaaacaaacgggtc
tggttatcattgaggttgacactcatttacaagggtctttctcttgatggtatccaggat
ggaatggtactcactgcccaagtgaaaagcgttgaggaccatggttacattctttatttc
ggagtatccacctttagtggatttatgccaaaatgtgacaaagaaactgtgaagattgag
agcggacaactcgtgcaatgtgttgtgaaggcaatcgataaagctcgagctattattcac
ttgagttgtgatgaagacttgctctccaaatccatcattaaagatctgaaaggcctttct
attgatcatctaattcctggcatgatgatgaatgcacgtgttcatacagttcttgaaaat
ggagttatgctgtcatttcttacttatttcactggaaccgctgatatttttaatttgtca
aactcatttccctctggtaattggaaagatgattacagtaagaataagaaggtaaatgcc
cgaatcttattcgttgatccgtcgacaagagcagttgggcttacattgaaccagcactta
cttcgttttgaagtaccccctgttaatgttaaagttggagaaatctatgagagatctcgg
gttctgaggatggataaaagggccggtctttttcttgaaataccttctccaactccatca
cctggatttgttagtatacatgatgtatcagacaaggatgtgaagaaagttgagaagaaa
tttaaggaaggcagcatcacacgtgtccgtgtacttggagtgcgacatcttgaaggagtt
gcgctaggcaccctaaaagacagtgcttttgaaggttctgttttcacccatgctgatgtc
aaaccaggaatggtagtgagagctaaggttgttactgttgggcctttggaagcaatcgtg
cagtttgcaggtggtgtgaaagcactttgcccgcttcgtcacatgtctgagttagataat
gttgtaaagccaccgaagaaatttaaggttggagctgaattacttttccgtgttttgggt
tgcaaatccaagagaataacagtgacatacaagaaatcgctggtcaaatcaaaacttgaa
gtgttggcctcatatgctgatgccaagattggtttagtgactcatggatggattactaaa
atagaaaagcacggttgctttgtgagattttacaacggagttaagggttttgtgagcaga
tctgagcttggactagagccaggtactgaagctgggagtgtttatcatgttgggcaagtt
gtcaaatgtagaattgtcagtgttgtccctgcttcaatgaaactaaatgttagttttgca
acatcttctaataggattattcaagccgatactgcgaaggtgggtactattgtctctgct
gttgtggagcggcttactcctgcagctgttgttgtcagtgtaaatggcttctccaaggga
tctatacttgacgagcatttggccgatcatcatggccaagctgctcagttgaagaattta
ttgaagcctggccatgagttcaaccagcttctagttcttgataccgaagggcaaaattta
attctttctgctaaacagtcacttatcaacagtgcaaatgacattccatcagagatatcg
cagatgcaagcgggagctgtagttcatggttatatttgcaacatcatagaagctggttgt
tttgttcgctttcttggacatctgactggtttctctcccaaggataaagcagttgatata
ccaatggaaaagctttctgctgcgttctttgttggccaatcagttcgaagtcacatcctc
aacgtaaatgcagaatctgcccgattgaagctttcactgcaacagtctgtgtgctcttca
ccagattgttcctttatgcaaggatactttcttctggatcagaagattgcggaaatgaag
tattcaggtagcagtacttctcatgattggaagaaatctcttggcattggcagcttggtt
aagggggaggtgggagcagtagaagaatatggtgttatccttaacttcaaagaccatcct
gatgttgttggcctgattgaacatcatcaacttggtggcagtactgtaaaagtgggttct
tctgtgaagggtcttattgtggatttatctgatggagttgtaaatttatcccttaagccg
gaactaattggcagtgtcagcatggatggaaaaaagaagaaacgtcacagagctgcggtt
ttggacttggagcttcatgaagaagtgaatgcagttgtggagatagtcaaagagagctat
gtggttctttctgtccccgagtataatcatgcaataggttttgcaccattgatggattac
aactctcagctgcttcctcaccaccattatgataatgggcagcgcattactgtcgttgtt
ggaagtatcccaagttctgacccttctggaagacttatcctactcccgaaaacatcaggg
cagggttctggtctctctagttctagaaaagcgaagaaattgtccgacaaagttgggtca
cttgttgaagcagaggttatcgatatcaagccacttgagcttattgtgaaatttggtgtc
aatcatcatgggaggattcatattaccgaggtccttgaagatgattgcagtgagcatcct
tttagtaaactcagaattgggcaaaagatccatgcaagagttgttgcccaagctgaacat
tcagcaaatagcggcagaaaactaaaatgggaactgtctattagaccatctgtgcttcaa
ggagagtccaaacaattaaatgcccttgaaaacaaatcaaaccattcagtgaatggaatt
gtgcgtgcttatgtcgtcaaggtggacagggagtgggtctggttaactgtatcaagaaat
gttacggcgcatttatttattctcgatagttccgttgagcccattgaactaaaagagttc
caacagcggtaccgtgtcggccaagcagtgaaaggatatattattggggtgaatagagag
aaaaagttgttgaggctgaaagcacttgataaccaagccatgctcaagaatatagatgac
acccaaaaaccaatctcttctattgctgaacatacaaaggaaggcgatataattggtgga
cgcattcaaaagattctacctggtgttggtgggctactcatccagattggacctcatctt
catggaagggttcattatactgaaattgttgattcgtgggtaccagaacccctttctgga
ttccatgaaggtcagttcgtgaagtgcaaggtcctggctgtaagccgcccatctgaagga
tctgtccgagtagaactgtcacttcgttcatctatcctatgcacaagtcatgacccatca
agaaaactagttgatgattcggcaacttgcactacccggtttgagaacgtcaatgatctg
tcccctggatcagaggttaagggttatgtgaagaacgtgaatgccaaaggttgtttcatt
atgctttctcgaatgatcgaggctaggattattttgtcaaatttgtcagatgagtatgtc
gaaaatcctcagaaggatttctcggttggaatgcttgtacacggaagggtcttgtctgca
gaaccactatcagggaaagttgaagtatcacttaggaagggcacaggtagcaaatcacag
aagtcggatggcattagttacagtgatctgcatgttggggacatcattgatggtcaagtt
aaacgggttgaatcctatggattatttgtgacaatccagagcagtgaactggtgggcttg
tgtcatgtatcagaactttctgatgagccagttcttgatattaactcttgctacaaagct
ggtgatatggttaaagccaagattttgaagattgacgaggaacggcgccgagtgtccctt
ggcatgaagaaatcttattttgtctctggtctgactgatggtataaatgacgacgacgat
gatgatgaaagggttcctatggacatcaatcatgtccctgagatgtctagtgatttgaac
agcgccttagttgttccagagccagaacccagggcttctgtgttgccacttcaagtctcc
ttggatgaatatgaaggttctgaccaagatagtgatgataaaggtcctaaaattgctaat
ggaactggatcaattgttcaaaagagcgataaacggttgaaggagaaggcgaggaaacaa
agggaactagatatcagtgccttggaggaaagggctttacagaaagatataccaaaaact
ccagatgaatttgagaagttggtccggagctctccaaacagtagctttgtctggataaac
tatatggcatttttgttagaccttgcagatgttgagaaagcacgttcagtagctgaaagg
gctttgagaacaataaacatgcgagaagaggaggagaaactcaatgtatgggtagcatac
tttaatcttgaaaatgaatatggttgtccacgggaggatgctgtcaagaaaatattccag
agagccatgcagtattgtgatcccaaaaaggtgcacttggctcttcttggaatgtatgag
agaactgaccagcacgaactggcagatgaacttttcgatagaatgaccaaaagattcaag
acttcatgcaagatctggttgcgccgcattcaattttctctcaagcaaggcagggatgtt
gaatacatcaaatccatcataaaccgtgcgcttctaagtctgccacagagcaagcgtatt
aaatttctctcacagactgctatcctggagttcaagtgtggggtgcctgaggaagggaga
tccagatttgagcttatcttaagggagtatccaaaaagaacagatctttggagtgtttac
cttgaccaagaaattcgccttggtgacacggacgttatacgggcattatttgatagagtg
acatgccttagtcttcctccaaaaaagatgaagttcttgttcaagaaatacctggcatac
gagaagtctcagggcgacagagaaagaatggagcttgtgatgcagaaggcaacggagtat
gctaagatttcacaagcctaa
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