Brachypodium distachyon (stiff brome): 100825719
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Entry
100825719 CDS
T01717
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bdi03009
]
100825719
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
100825719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
CEP104-like_TOG
DnaB_bind
Motif
Other DBs
NCBI-GeneID:
100825719
NCBI-ProteinID:
XP_003569270
UniProt:
A0A0Q3KBZ6
LinkDB
All DBs
Position
2:42264125..42282778
Genome browser
AA seq
2685 aa
AA seq
DB search
MATPSYAGVKCLNTSSSSRKRFVFKSFSQRVEEIDIDVYRSLHAVKAEPSSGSSFLLDAL
VEWRELNTAEDFISLYDEIIPLVQTLPQIVLHCEKIFSGLLQRVNMKARLSLEPILMLIA
ALSRDILKDFLPFLGRYSSAIVALLSDGGDRDPEILEQVFTSWSCIMMYLQKYLVEDVVQ
ILRITAALRFFPKDYVREFMAESVSFLLRNAPNSQLTQGLRKALLEAAKNPSPIRIDGVT
ALLWHVMRGTYAKLHSRAGKVMKFLLSKSILTSIDVKFPNGSSTIREVVTGVVDRLSNEV
DQKELALIYTCLFEEITNCIKDDCVEHLKYLIDFLTFALQNSKQSDVIDKDNMVKLVKLL
VCKYVEPGSSTGEASSGLLGSILDFLICVLDVPVISCNLSIIYAPVFELTNLSVVVFIKK
LLEKGPQIIQAFESHILGAMDNFIESSPEDVIFILLNFFKRATDGITHGIDGTHLYGKKK
VYKFFESKVFSSIELLDDIVKTGNHSSNQVSEKEAAILWGSIRCYPNMKDVPRDSLSMLS
KFICSLDQLLEVEEDSISGLPKNTWRSLLGASLLSYHELLPANVSRNSESGLFLSLAKKH
STCPQVLSAVAEYLDSLHGTTSLGMTEEFDPQNLLNSFSIFGANLSSPNKNIRVLTLRIL
SYFAKMDKRLASDDERPYKRQRTEDSAEENIDIKYSNVLDTLLAVESTPVSVSTSRKIAI
FISRIQMSISSNMVHDDYIPLLLHGIIGILYNRFSDLWPPALDCLSVLVSKHKGLVWSQF
IEFISIHQSKGLTLKNQEKLEAAIHPQSIFECFSTYIVTVFEYTPLETIATLLLQSLQKI
PDVAESSSRHLVPLFLNFMGYNDSSITSVDSYMSDNCKGKQWKMILKEWLNLLRVMRDAR
SLSQSKVIQEILTERVLDESDPDIQAKALDCLLNWKDEFLMPYSQNLKNLVELKTLREEL
TTWAVSHDSLSIQKCHRSRVVPLVIRVLTPKLRKLKLLGSRKHTGVSHRKAILRFLLQFD
SNELQLFFSLLLKSLVPGSLQLEMSCRESGNLLGNISDIVGISKEICVENLTWKKANGFL
HLVEEIFGTFGMAHISPFLNALLIIVVCLLESCMRNLGNKSDEIHQSNHPDNDCSMNEEA
DSSINMKTCSEEMAEADDTEASASVKQLKDLRSLCIRIVSLALSQYESHDFGEYFWNTFF
ASVKPLIDCFKQEASSSQKPGSLFSCFMVMSQSPKLAPLLATNNLVPAIFSILTVKTASE
SITSHALQFIENLLRLDNDLEQEDDHSVKKILVQHMNVLLHSLHVFVNYRKELHRRSGRW
LGKRELRLFKLLLNYITDPSAAEHVVDLVLPFFSKKDLNSDECLEALHVVRGILPNLRVA
VCAKIINALNPLLATVGLELRLCICDIYEGLSSHESSVTPLARLLRDLNAVSASELGELD
YDTRIKAYDMVQPRLFHGMREEHMGAILSHCVYDMSSEELIFRQSASRALQSFLEFSASI
MNNDSECSSETPDIKHGETNSSSTCTKGRIQPILERTYLHNMGLAMCKDISVQKEWIILL
REMVYNFNHVPSLNSFRLLCKEDLDDDFFHNIIHLQAGKRSKALSLFRQTIKDTSVSEDV
TMKVFVPLFFNMFFDVKAGKGEQVRDVCLDTLSSVAANVQWEHYRTILMRCFRELSLKPD
KQKVILRLICAVLDAFHFTKPATNVLSKSDSMNEDSPSLTFSLTTVSSEKQRYLRKVVFP
QVQKLLGADPEKVNVSINLVALKILKLLPVDYFESQLSSIIHRICNFLKNRLESVRDEAR
SALAASLKELGIGYLQFVVKILRAILKRGYELHVLGYTLHYLLSKIITAEMNGSLDYCLQ
DLLAVVESDILGDIAEQKEVEKIASKMKETKKRMSFETLKLISQSITFRTHSLKLILPIS
AHLRKHLTPKLRTKLETMLHSIALGIECNPSTETSNLFIFVYGLVEDTITVNESPCRENM
DSHCGKEKIHRKNLLGLGESGLQNTYILTRFALSLLRNRLKSIKLHKEDEQLLSMLDPFV
NLLGKCLSSKYESVLSVAFRCIAMLVKLPLPSLKDNANPIKNVLMDIAQRTGNSNGHLVT
SCLKLLAHLLRGFRISLSDDQLQMVIRFPIFVDLQTNPSPVALSLLKAIVKRKLVSHEIY
DIIVRVGELMVTTQTESIRQQCIQILLQFFLNYPLSEKRLQQHIDFFLTNLSYEHPLGRE
AVLEMLHDILTRFPQRIIDDQGQTFFLHLVVALANEKHQNVSSMILRAIQKMLGRIGDQG
KNYIFEYSLSWYTGKKQNLWSASAQVIGLLVGDRSLGIGKYLKSILDVAKQIMESSVAAS
GGVQLDLTDETALPFWKEAYYSIAMVDRLLLHFPELYFSQNMEDIWMIVCKLLVHPHSKL
RNMSSSLVASYFTSVEKRKREKLDATSSFLVQPSRLFLIAASFLKQLRTELSDTTANNLI
MQNLAYSICNLHLLVKQIASPHQFWSSLGSSDHGAFLEGFELLGSTKAKNTFLLCTASSA
CAAGSDVDSSEELMSLLVSSLLKRMGKIAMQMEDTHMKIIFSCFSMISSALGAEVSVTYS
VHFLAPLYKVAEGFAGKVISDEVKQSAEVARDKLRNLIGVEKFVEVYNSVRKDLKAKRES
RKQAEKLVAAVDPARHAKRKLRIAAKHRDHKKRKVMAMKMGRWLR
NT seq
8058 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccatcgtacgcgggtgtgaagtgcctcaacacatcgtcctccagccgcaag
cgctttgtgttcaagagcttctcgcagcgggtggaggagatcgacatcgatgtgtaccgt
agcctccacgcggtgaaggcggagccttctagcggttcctcgtttctcctcgacgccctc
gtggagtggagggagctgaatactgcagaagacttcatctctttgtatgatgagataata
ccattggtgcaaacactaccacaaattgtattgcactgtgaaaaaatattttctgggctg
ctacaaagagtaaacatgaaggcacgattgtccctcgaaccaatactcatgttaattgca
gctctctccagggatattctaaaggattttttgccgtttctaggaagatattctagtgct
attgttgctcttcttagtgatggaggcgatcgtgaccctgaaatcctagagcaggtcttc
acatcttggtcatgtataatgatgtacttgcaaaagtatctagtagaagatgttgtccag
attctcaggatcacagctgcattgagatttttcccgaaggattatgttagagaatttatg
gctgaatctgtttcatttttgctgaggaatgcacctaatagtcaactaacacaaggtttg
aggaaagctcttcttgaggctgctaaaaatccatctcctatacgaatagatggggtgact
gctttgctatggcatgtcatgagaggaacttatgccaagcttcactcaagagctggaaaa
gtcatgaagttcttgttgagcaagtcaatccttaccagtatcgatgttaaattcccaaat
gggtcttctactattcgtgaggttgtaactggtgtggttgatcgattatccaatgaagtg
gaccagaaagagttggcattgatatatacttgtttatttgaagagatcacaaactgtatt
aaagatgactgcgtggaacatttgaagtacctgattgattttcttacatttgctctacaa
aacagcaagcagagtgatgtgattgataaggacaacatggttaaacttgttaagttgctg
gtctgcaagtatgtcgagcctggtagcagcacaggggaggcttcatctgggcttcttgga
agtatcttggactttctgatttgtgttctggatgttccagttatttcttgcaatttatcc
atcatatatgcaccagtatttgaactaacaaatttgagtgtggttgtctttataaaaaaa
ctattggagaaaggcccacaaattatacaggcttttgaaagtcatatattgggtgcaatg
gataattttatagagtcttcacctgaggacgtcatctttatccttctgaatttctttaag
agagcaacagatggaataactcatggcattgatggaactcatctttatgggaagaagaaa
gtgtacaagttctttgagtcaaaagttttttcatcgatagagttattagatgatatagtc
aagactggcaatcactcaagtaatcaggtaagtgaaaaggaagctgcaatactatgggga
tctattcgctgctacccgaatatgaaagatgtccctcgagatagtttatcaatgctcagt
aagttcatctgcagccttgatcagttacttgaggtggaagaagatagcattagcggtctt
cctaagaatacctggagaagtctacttggtgcatcattattatcataccatgaattacta
ccggctaacgtcagtagaaattcggaatcagggcttttcctatctcttgccaagaagcac
agcacatgtccacaagtactctccgctgtagctgaatatttggattccctgcatggaacg
acttccctggggatgacagaagaatttgatccacagaatcttttgaattcattctctatc
tttggtgctaacttgagcagtccaaataagaatatcagggttttaacattgagaatatta
tcctattttgctaagatggacaaacgtctagcctcagatgatgagcggccatacaagagg
caaagaacagaagattctgcagaggaaaatatcgacattaaatacagtaatgttctggac
acccttctggctgttgaatcaactccagtttcagtatctactagccggaaaattgctatc
tttatttctcggatacagatgagtatatcttctaatatggttcatgacgattacatacct
cttctcctgcatgggattattggcatcttatacaatagatttagtgatctgtggccacca
gcactggattgtcttagtgtccttgttagcaaacacaaggggctcgtctggagtcagttt
attgaatttatttcaattcatcagtcaaagggtctgactctgaaaaatcaggagaagctg
gaagctgcaatccaccctcagtctatttttgagtgcttcagcacatatattgttacagta
tttgagtacacacctcttgagacgattgctacacttttgcttcaatcccttcagaagata
cctgatgttgctgaatctagctctcgacatcttgtgccgctatttttaaacttcatgggc
tataacgatagcagcatcactagtgttgattcatatatgtctgacaattgtaaaggcaag
caatggaagatgattctaaaggaatggctgaacttgttgagagtaatgcgtgatgctcga
tcgttgtcccagagcaaggttattcaggaaatattaactgaaagggtgcttgatgagagt
gatcctgacatacaggcaaaagcattggattgccttttgaactggaaggatgagttcttg
atgccatacagtcaaaaccttaaaaatctggttgaattaaagactcttcgtgaagagctc
accacatgggcagtttcacatgattccttgtccattcagaaatgccacagaagtcgtgtt
gttccgttggttatccgtgttttaacaccaaaattaaggaaactaaagctgcttggttct
cgtaagcacacaggtgtcagtcatcgaaaggcaattctccgtttccttctgcagtttgat
tcaaatgaacttcagcttttcttctcattacttctgaagtccttggtcccggggagtctt
caacttgaaatgtcctgtcgtgagtctggcaacctgcttggaaatatttctgacatcgtg
ggaatttcaaaggagatctgtgtagagaaccttacatggaagaaggccaatggttttctt
catttggttgaagaaatttttggtacttttggtatggcacacataagtccatttctgaat
gctctattgatcattgttgtttgcttgttggagagttgtatgcggaatctcggaaacaag
agcgatgagatacaccaatcaaatcaccctgacaatgattgttccatgaacgaggaagca
gacagttctataaacatgaaaacatgctcagaagagatggcggaagcagatgatactgag
gcaagtgcctcagtcaagcaattaaaggatttaaggtctttatgtattaggattgtttcc
ttggcacttagtcagtatgaaagtcatgactttggagaatacttctggaatacctttttt
gcttctgtgaaacctctgattgactgcttcaaacaagaggcttcgagtagtcagaaaccg
ggctcattattttcatgcttcatggtaatgagccagagcccaaaattagcaccattgttg
gcgacaaataaccttgtgccagccattttttctattttgactgtgaagactgcgtcagaa
tctatcacctcccatgcacttcagtttattgagaatctattgaggctagataatgatttg
gagcaggaagatgaccactcggtgaagaaaattctggttcaacatatgaatgttcttctc
catagtctccatgtttttgttaattatcgcaaagagcttcacaggagatctgggagatgg
cttgggaaacgtgaacttcggttgtttaaattattgttgaattacataacagacccctca
gctgcagagcatgttgtagacctcgtccttccttttttcagcaagaaggatttgaattct
gatgagtgtctggaagctctgcatgttgtaagggggatacttccaaatctacgagttgca
gtgtgtgcaaaaattataaatgcacttaacccattgcttgcgactgtcggtcttgaactg
cggctatgcatctgtgatatttatgagggactgtcatcgcacgagtcttcagtgacacca
ctggctaggttactgcgagatctgaatgcggtctcggcctcagaacttggggaactagat
tatgacacgagaattaaagcatatgatatggttcagccgcggttgtttcatggcatgaga
gaagagcatatgggtgccatattatctcactgcgtgtatgatatgtcatctgaagagtta
atttttcggcaaagtgcgtccagggctcttcagtcattcctggaattctctgcatcaatt
atgaataatgactccgaatgttctagtgaaacgcccgatataaaacatggagagactaat
tccagcagcacttgcacaaagggccgtattcaaccaatattagagagaacttaccttcac
aatatggggttagcaatgtgtaaagatatctcagttcagaaggagtggatcatcttactt
cgggagatggtctataattttaatcatgtaccatccttaaactccttcagacttctctgt
aaggaggatctggacgatgattttttccataatataattcatttacaggcgggtaaaaga
tcaaaagcattgtctcttttcaggcagacaatcaaagataccagcgtttcagaggatgtg
actatgaaagtctttgttccgctattttttaacatgttttttgatgtcaaagctgggaag
ggtgaacaagtaagagatgtatgtttggacacactttcttctgttgctgccaatgtgcag
tgggagcattaccgaacaatactgatgagatgcttccgtgagttgagtctcaagcctgat
aagcagaaggtcatattgaggctaatatgtgctgttttagatgcattccatttcacgaaa
cctgcaaccaatgtcttgagtaaatccgattctatgaatgaagattctccttcccttacg
ttctccttaactacagtctcttcggagaagcaacgctacctgcgaaaggtagtctttcca
caggtccagaagttattaggagctgatccagagaaagtcaatgtcagtataaaccttgta
gcactaaaaatactcaagttactaccagtggattatttcgagtcacaactttcaagcatc
atacatcgaatctgcaactttctcaagaatcgtcttgaaagcgtgcgtgatgaagcaaga
tcagctttagctgcatctctaaaggaactggggattggctatttgcagtttgtggtcaag
atattgagggcgatactaaagaggggttacgagttacatgttctgggttacacacttcat
tatttattatcaaaaatcataacagctgagatgaatggtagtcttgactactgcttacaa
gatttgttggctgtggtggagagtgatatacttggagatattgcggaacaaaaggaagtt
gaaaagatagcctccaaaatgaaagagacaaagaagaggatgtcatttgagactcttaag
ctgatttctcagagtattacattcagaacacattctttaaaattaatcttaccaatttct
gcgcatcttcggaagcaccttactccaaaattaaggacaaaactggagacgatgctacac
agtatagccttggggattgagtgcaacccatcaactgaaacatctaacttatttatattt
gtttatggccttgttgaggatactatcacagtaaatgaatctccttgcagagagaatatg
gattctcattgtggtaaagaaaagattcacagaaagaatttacttggacttggtgagagt
gggttacaaaacacctatatacttacaaggtttgcactttctttactgcgtaatcgtttg
aaaagcatcaagctgcacaaggaagatgagcaacttctgtcgatgttggatccttttgtc
aacctcttgggaaaatgtctgagttctaaatatgaaagtgtcctttctgttgcttttaga
tgtattgccatgttggtgaaacttcctttgccatctctgaaggacaatgcaaatcctatc
aagaatgtacttatggacattgcacagagaactggaaattccaatggtcatttggttact
tcttgtttgaaactacttgctcatctacttagaggcttccgaatttcactttcagatgac
cagctccagatggttattcgtttccccatttttgttgacctccagacaaacccttctcct
gttgcgttgtctcttttgaaggcaatagtcaaacggaaattggtttcccatgagatttat
gatattatagtcagggtaggagaacttatggttacaactcaaactgaatctataaggcag
caatgcattcagattctgctacaattttttctgaattatccactttcagagaagcgctta
caacagcatattgatttcttcctgacaaatctgagttacgagcatccattaggaagagaa
gctgtgctcgaaatgcttcacgatattcttaccagatttccccagaggattattgatgac
cagggccaaacattttttcttcatcttgtagttgctttagcaaatgaaaagcaccagaat
gtgtcatctatgatccttagagcaatccagaagatgttaggacgcattggtgatcaggga
aagaattatattttcgagtactctctttcgtggtacactggcaaaaaacagaatttgtgg
agtgcttcagcccaggttattggtttacttgttggagaccgctcactaggaattggtaaa
taccttaaaagtatattggatgttgcaaagcaaataatggaatcttctgtcgctgcatct
gggggagtacagctagatttaactgatgaaactgccctacctttttggaaagaggcgtac
tactctattgccatggtggataggttactactacactttccagagttgtatttctcgcaa
aatatggaggatatatggatgattgtttgcaagctgttggtccatccccactcaaagtta
cgtaatatgtctagctctcttgtagcctcatattttacttcagtggagaagaggaaacgc
gagaagttggatgctacatcatcattccttgtccaacctagcaggctattcctaatagct
gcttctttcttgaaacaattgaggacggagctaagtgatactaccgccaacaatctaatt
atgcaaaatcttgcatactcgatctgtaacttgcatttgttggttaagcaaatagcctca
ccgcatcagttttggtctagccttggttcatctgatcatggtgccttccttgagggtttt
gaattgctcggttcaacaaaagcaaagaacacatttctcctctgcactgcttcttccgct
tgtgcagctggatctgatgttgacagtagcgaggaacttatgtctttgttagtttcttct
cttttgaagaggatgggaaaaattgcaatgcagatggaggatacacatatgaaaatcata
ttcagttgtttcagtatgatttcatcggcgcttggagctgaagtgtcagtgacctactct
gttcacttcttggccccattgtacaaagttgctgaagggtttgctgggaaagtcatcagt
gatgaagttaagcaatcagcagaggtggcccgggacaaactacgtaatctgattggtgtt
gagaaatttgtcgaagtttacaacagtgtccgcaaggaccttaaagccaagagggagagc
agaaagcaggcagaaaaacttgttgcggcggttgacccggcacgccatgccaagaggaag
ctgcgcatagccgcaaagcaccgagaccacaagaaacggaaggtaatggcgatgaagatg
ggaaggtggttgaggtag
DBGET
integrated database retrieval system
