Brachypodium distachyon (stiff brome): 100825736
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Entry
100825736 CDS
T01717
Name
(RefSeq) chaperonin CPN60-1, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100825736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100825736
03110 Chaperones and folding catalysts [BR:
bdi03110
]
100825736
03029 Mitochondrial biogenesis [BR:
bdi03029
]
100825736
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bdi04147
]
100825736
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
100825736
Messenger RNA biogenesis [BR:
bdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
100825736
Chaperones and folding catalysts [BR:
bdi03110
]
Heat shock proteins
HSP60 / Chaperonin
100825736
Mitochondrial biogenesis [BR:
bdi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
100825736
Exosome [BR:
bdi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100825736
Exosomal proteins of other body fluids (saliva and urine)
100825736
Exosomal proteins of breast cancer cells
100825736
Exosomal proteins of colorectal cancer cells
100825736
Exosomal proteins of bladder cancer cells
100825736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ChlI
Motif
Other DBs
NCBI-GeneID:
100825736
NCBI-ProteinID:
XP_003574012
UniProt:
I1I4G9
LinkDB
All DBs
Position
3:29142370..29148256
Genome browser
AA seq
574 aa
AA seq
DB search
MYRAAVSLASKARQAGSSARQVGSRLAWSRNYAAKDIKFGVEARALMLRGVEELADAVKV
TMGPKGRTVIIEQSFGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGT
TCATVLTKAIFSEGCKSVAAGMNAMDLRRGISMAVDDVVTNLKGMARMISTPEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKIDRGYISPYFITNPK
TQKCEMEDPMILIHEKKISNLPAFVKVLELAHAKQRPLLVVAEDLESEALGTLILNKLRV
GLKLCAIKAPGFGENRKANLQDLAILTGGEVISEELGMSLENFDPQMLGTCKKVTVSKDD
TVILDGAGDKKNMEERAEQIRSAIEESTSDYDKEKLQERLAKLSGGIAVLKIGGASEAEV
SEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKALDKLQTANFDQKIGVQIIQNALKT
PVYTIASNAGVEGAVVVGKLLEQDNTDLGYDAAKGEYVDMVKVGIIDPLKVIRTALVDAA
SVSSLMTTTESIIVEIPKEEKEAPAMGGMGGMDY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgcgcggccgtcagcctcgcctccaaggctcggcaagccgggagcagcgctcgt
caggttggaagcaggcttgcctggagcaggaattatgccgccaaggacatcaagtttggt
gttgaggcccgtgctttgatgctgaggggtgttgaggagttggctgatgcagtcaaagtc
acaatgggtcctaaggggcgcactgtgattattgagcagagctttggtgcaccaaaagtc
acaaaggatggtgtgactgttgccaagagcattgaattcaaggatagagtcaagaatgtc
ggtgcaagccttgtgaagcaggttgctaatgcaacgaatgatactgctggagatggtacc
acatgtgctactgttttgacaaaagcaatatttagtgagggttgcaagtctgtagcagct
ggaatgaatgcaatggatctgaggcgtggaatctcaatggcggttgatgatgttgtgact
aacctgaagggcatggctagaatgatcagcacaccagaggaaatagcgcaggtgggtaca
atatcagcaaatggagagagggaaattggtgagcttatcgctaaggctatggagaaggtt
gggaaagaaggtgtaattacaattgcggatggtaacacactttataatgagcttgaagtt
gtggaaggcatgaaaattgacagaggttacatctctccttactttattaccaacccgaag
acccagaaatgtgaaatggaagacccaatgatcttgatacatgaaaagaagatctcaaac
ttgcctgcatttgttaaagtgttagagttggctcatgcgaagcaaagacctctactggtc
gttgcagaagatctagaaagtgaagcattgggtacgctgattcttaacaagcttcgtgtg
ggccttaagctctgtgctattaaagctcctggttttggggagaacaggaaagcaaatcta
caggaccttgctatccttactgggggagaagtcataagtgaagagcttggaatgagcctt
gagaactttgatcctcagatgttaggtacatgcaagaaggttactgtttctaaggatgac
actgttattcttgatggagctggagacaagaaaaacatggaagagagagcagaacagatt
aggtctgcaattgaggaaagcacttccgattatgacaaggaaaaactacaggagcggttg
gcaaagctttctggaggcattgctgttctaaagattggaggagccagcgaagctgaagtt
agtgagaagaaagacagagtcacagatgcactgaatgccacgaaagctgctgtcgaagag
ggtattgtgccaggaggtggtgttgcacttctatatgcgtcaaaggctctggataaattg
cagactgcaaattttgatcagaagattggtgtgcaaatcattcagaatgctttgaagaca
ccagtgtacacgattgcctccaatgctggcgttgaaggggcagtggtcgttggtaagctt
ttggagcaggataacactgatcttggatatgatgcagctaagggtgaatatgtggacatg
gtgaaggttggcatcattgatccactgaaagtgatcagaactgccttggtagatgctgca
agtgtttcatctctgatgaccaccacagaatccatcatcgtagagatcccgaaagaggag
aaagaggcacctgcaatgggcggcatgggtggaatggattactga
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