Brachypodium distachyon (stiff brome): 100826078
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Entry
100826078 CDS
T01717
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100826078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100826078
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100826078
mRNA degradation factors
5'-3' decay
Decapping complex
100826078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
100826078
NCBI-ProteinID:
XP_003577832
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All DBs
Position
4:30588223..30592400
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AA seq
374 aa
AA seq
DB search
MPPPPPPPPATNGAKLTPNLAMDAEGTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNID
LNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAA
QEVNGIWFYNQHDCDAVANLFGRILNAYARVPPKAKVPPTKSEFEELEAVPTSAAIDGPL
EPPPASNLISDTPDESLANYFGGAASIGSVSSAPMVGRGYPPSDSVGSSHVPMIISSAAP
THQIPLPLEASSAPPLPLQDNNAHASHSTNLVTPAFFAPPSSSAASLAPLASSMLPTAPP
LHPTLSSAQHSQYGHGTPLLQPFPPPAPPPSFAPAHNNEGPVISRDKVKDALLRLVQSDQ
FIDLVYRELQNAHM
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcctcccccgccgccgccggcgacgaacggggccaagctgacccctaacctg
gccatggacgccgagggcacccgcctgctcaacctcaccgtgctgcagcgcctcgacccc
gccgtcgaggacatcctcatcaccgccgcccacgtcaccctctacgacttcaacatcgac
ctcaaccagtggagccgcaaggacgtggaagggtcgctgttcgtcgtgaagaggaacacg
cagccgaggttccagttcatcgtcatgaacaggcggaacacggataatctggtggaggat
ttattaagtgattttgaatacgaactccaacctccgtatttgctgtaccggaatgctgca
caagaagtaaatggtatttggttttataatcaacatgactgcgatgccgttgcaaatctt
tttggaaggatactgaatgcttatgccagagtgcccccaaaagcaaaagttcctcccacg
aaaagtgagtttgaggaattggaggctgttcctacatctgctgctatagatgggcccctt
gaacctccaccagcatccaatcttatttctgatactcctgatgaatctcttgccaattac
tttggtggcgctgctagtattggaagtgtgtcaagtgcaccaatggttggaagagggtac
ccaccctccgatagcgttggatcttcccatgtgccgatgattatttcatctgctgccccg
acacatcaaataccactccctttagaggcttcatcagctccgccactacctctccaggac
aataatgcccacgccagccactcaacaaatcttgtaacaccggcattctttgcgccccca
tcgtcctctgctgcatccctagcgcctctggcttcatcaatgctgcccacagcaccgcca
cttcatccaactctgtcatcggctcaacattctcagtatggacacggcacccctctactc
caaccttttccaccacccgcgccgcctccttccttcgcccctgcacacaataacgagggg
cctgttatctcgcgggataaagtcaaggacgccctccttaggcttgttcagagcgaccag
ttcatcgatttagtttaccgggagttgcagaatgcacatatgtag
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