Brachypodium distachyon (stiff brome): 100826234
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Entry
100826234 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100826234
09122 Translation
03013 Nucleocytoplasmic transport
100826234
03015 mRNA surveillance pathway
100826234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100826234
03041 Spliceosome [BR:
bdi03041
]
100826234
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100826234
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100826234
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100826234
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100826234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
100826234
NCBI-ProteinID:
XP_003569186
UniProt:
A0A0Q3GAC3
LinkDB
All DBs
Position
2:40873652..40878335
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AA seq
429 aa
AA seq
DB search
MMGEAKDNEVYEEDLVDYEEEVENAVDGAAANASVDVVKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAAL
VLCHTRELAYQICNEFERFSKYLSETKVAVFYGGVHIKKHKDLLKNECPHIVVGTPGRIL
ALARDKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
ICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQIVIFVKSV
GRASELNKLLCECNFPAICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggacaacgaggtgtacgaggaggatctcgtcgactatgaggag
gaggtcgagaacgccgtcgacggcgcagcagccaacgcctctgtcgacgtcgtcaagaag
gggtacgtggggatccacagttcggggttcagagacttcctgctcaaaccagagctgctc
cgcgccatccaggactgcgggtttgagcatccttccgaagtccaacatgaatgcatccct
caagccattcttggaatggatgtcatctgtcaagctaaatctggaatgggtaagactgct
gtctttgtcctctcaactctccagcagattgatcctgttgctggccaagtagctgcactt
gtgctatgccatacaagggagttggcgtaccagatttgcaatgaatttgagaggtttagc
aagtacctgtcggaaacaaaagttgccgtcttctatggtggtgttcacataaaaaaacac
aaggatttattgaagaatgaatgtcctcatattgtggttggcacgcctggaaggattcta
gcactagctagagacaaggatctttccttgaagaatgtgagacatttcattcttgatgaa
tgtgacaagatgcttgattcacttgacatgcgtagagatgtccaggagatcttcaaaatg
acaccccatgataagcaagtgatgatgttttcagcaacactcagcaaggagattcgcccg
atttgcaagaaattcatgcaagatcccatggaaatttatgtcgatgatgaggctaaattg
acccttcatggcctagttcagcactacataaaactaagtgaggccgagaagaatcggaaa
ttgaacgatcttttggatgcgcttgacttcaaccaaattgtgatatttgttaaaagtgtt
ggtagagcttcagaacttaacaagctgctctgtgaatgcaattttcctgcgatctgcatt
cattctggaatgacacaggaggagaggttgacccggtataagaacttcaaggaaggacac
aagaggatacttgtggctacagatttagttggcagggggattgatatcgagcgtgtcaac
attgtcataaactatgacatgcctgattctgctgatacatacttgcacagggttggaagg
gctggacgttttggtaccaaggggcttgcaataacatttgtttcttctgcctcagattct
gatgttctcaatcaggtgcaagaaaggttcgaggttgacataaaggagctgcctgagcag
attgacacttcgacatatatgccatcttga
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