Brachypodium distachyon (stiff brome): 100826934
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Entry
100826934 CDS
T01717
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100826934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100826934
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100826934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
AAA_29
Motif
Other DBs
NCBI-GeneID:
100826934
NCBI-ProteinID:
XP_010240351
UniProt:
I1J1A0
LinkDB
All DBs
Position
5:23269902..23275466
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AA seq
680 aa
AA seq
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MPRKIFSGPDCDDEYDDYDEYEDDYYDSDEAGQGDIQPPVKEKESLKNSSNKVPVLWKCS
MCTFDNHETMVYCEMCGVFRESFVKSAKDGLIKGSINGVSSDSGTYAVSSSDSAKIPAKT
GTTNFHGDSEKKCAITSNDKVNSTQLASVGSSSGTGRKKQPIIRPEEDVPVERTSQLIAD
HFQPMGDQSSRASSSAQNKDSMQTLSSSISELSIEKNNINVTKPYLLEDYKAEEWMLADQ
ASGMLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKEKGKGSFAYAWAM
DESTEERERGVTMTVAVAYFETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDAST
GSFEAGMNGAGGISIGQTKEHAQLIRSFGVEQLIVAVNKMDAIGYSKERLEFIKVQLGSF
LRSCNFKDSSVTWIPLSAVENQNLIQPPSDARFTSWYRGSCLLDAIDSLQLPSRDVTKPL
VLPICDVIKSQLTGQLAAFGKLEAGAIRNGSKVLVLPCGQEATVKTIERDSSSCSIARAG
DNVSVCLQGVDGNRIIPGGVLCHPGFPVLVADYLELKIRVLDITVPILIGYQVEFHIHHV
KEAAKITKIMALLDKTGKPSKTAPRFLKSKQSAVVQVKLDGAVCVQEFSKCRALGRAFLR
SSGSTIAVGIINKILGQYQN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaagattttctccggtcccgattgtgatgatgagtacgatgattatgatgag
tatgaggatgattattatgattctgatgaggctggacagggtgacattcagccacctgtg
aaggagaaagagtcattgaagaattcatcaaataaagtgcctgttctttggaagtgctcc
atgtgcacatttgacaatcatgaaactatggtatattgtgagatgtgtggggttttccgg
gaatctttcgtcaaatctgccaaggatggtttgataaaaggttccatcaatggagtatca
agtgattctgggacatacgcagtgtcaagctctgattctgccaagattccagcgaagact
ggtacgacaaactttcatggtgattccgagaaaaagtgtgctatcacatccaatgataaa
gttaattccacacagctagcatctgttggtagctcatcaggcaccggaagaaagaagcaa
cccattatacgacctgaagaagacgtgcctgtcgagaggacaagtcaattgattgccgat
cattttcaacccatgggggaccagagtagtagggctagcagctcggcacagaataaggat
tcgatgcagacactttcttcgagcataagtgagttaagtatagaaaagaataatataaat
gtcacaaaaccttatttactagaagactataaggctgaggaatggatgctagctgatcaa
gcgtccgggatgctgagccaactaaaccttgcaatagtgggtcatgttgattctggcaag
tcaacactctctgggagattgctgcacctattaggaaggatatcgaaaaaagagatgcac
aaaaatgagaaggaggccaaggagaaaggaaaggggtcatttgcttatgcatgggccatg
gatgagagcactgaagaaagagaaagaggtgtcacaatgacagtggctgtggcttatttc
gagaccaagaagtaccgtgtagttttgctcgactctcccggccacaaagattttgtgcca
aatatgatatctggtgcaacacaagctgatgcagctattcttgtggttgatgcttcaact
ggttcttttgaagctggcatgaatggtgcaggagggataagtattgggcagacaaaggag
catgctcagcttattagaagctttggtgttgaacagcttattgttgcagtcaacaagatg
gatgccattgggtactccaaagaaagattggagttcatcaaggtacaacttggaagtttt
ctgcggtcatgcaacttcaaagattcatctgtcacctggattcctctaagtgctgtagaa
aatcaaaatttgattcaacctccttcggatgctcgttttacctcctggtatcgagggtcc
tgtctcttggatgctatagactcattgcagcttccttctcgggatgttacaaaacccctc
gttcttcctatatgtgatgttatcaagtctcagttgacaggacagcttgcagcttttgga
aaattagaagctggggctattcgaaatggttcaaaggttttagttttaccctgtgggcaa
gaagcaacagtgaaaaccatcgaacgagactctagttcatgcagcatagcgagggctggt
gacaatgtatcagtttgtttacagggtgttgatggtaaccgaataatacctggtggggtt
ctttgccaccctggtttcccggttcttgtagccgactacctggagctaaagattcgtgta
ttggacatcactgttcccattcttattggttatcaggtggagtttcacatacatcatgta
aaggaagctgcaaaaataacaaaaatcatggcattacttgacaagacaggcaagccaagt
aaaacagcaccacgatttcttaaatcaaagcagagtgctgtcgtacaggtcaagctagat
ggagctgtctgtgttcaggaattctccaagtgccgagctcttgggagggcattcttaagg
tcgtctggaagcacaatcgctgttggtatcataaataagattttggggcaatatcagaac
taa
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