Brachypodium distachyon (stiff brome): 100827475
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Entry
100827475 CDS
T01717
Name
(RefSeq) uncharacterized protein LOC100827475
KO
K24155
rabconnectin-3a
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
100827475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bdi04131
]
100827475
Membrane trafficking [BR:
bdi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
100827475
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
100827475
RAVE complex
100827475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
100827475
NCBI-ProteinID:
XP_003569190
LinkDB
All DBs
Position
2:complement(41017624..41034678)
Genome browser
AA seq
2442 aa
AA seq
DB search
MGDALPQLPLALHPPHLIPPAPTPDHRALSFLPDLGGLPWVAYAAGSLLVVSHLPSPPRT
SGSCTAEDESPFFRQVIDLHAPVAAVAWCGRGGGELAAAAGNTVSIFQPAPSSSAGSFSW
LLRWAITETFAVTAVAWTGSGDGIVAVGGAVSMWARAESSWQLAWRSIPEVPQSLASATH
FVDGPVVAASAAAPAAGNVPVLVFLNDAKLGLEKAELPHPLPVSMIQWRPRVLCVNDPSE
VRREILMTCCLDGTARLWAEDEVIRSNKQRASHRSFSVVAVIELNNVLNGVLGVDITMRW
VVETGSLILRDEEGKFKLFSGDSEQNQVGKCEWLVSVGPGHSSNFWAVHCLDDVCPPRYP
RITLWKQSKPKAWEEHAVNLGPRKPILSSIFVDAIISRRICSGPPTTCSLLHLLPDNSFI
WSCLSFGLSSVSGSYTSSDSSKSISCCSTKTINQDGHKGTIIQVSVHPYSCEIELAVSMD
SSRMLFLWSLSTLSTLMPTLHAPTYPLWKLLHKFDLCDISEDVQYSCLSWAPSVFRDNRF
LVLGGENGADCFVFRIPKEGVVSHHKMFTIPFLVGSNVEGPPDSIHTIPLASNCNDPFFN
NSFLLVCIWRKGFQAFSWKVVLHSKNHHPEGGCLCGFSASSLSTADQKRHVTYIRSEMFS
AVIYEGSSVFPAGLDGEYPTCISVMSLNNTVLPLKQQDPSGSSPGYHIATGSSDGTVKLW
KFSGADNPLQTGTESIIWELVGMFGAHHGPISAISLSRCGRIATVGRDVQKNSTSIHIWE
AVKLMRDGCFLLEDALMIQSPVVGLNWLSLGDGRILLAVYFLHELHIYSHKHPSFQNVLH
SANLKDKHLWSCITVAHSHHGVAGFHWGPRATIVLVHKNHLSLFSSWLVRGGNEHITQKG
VCSATNVHKELPCTVHFNETIFDTFGLSENYSNIDTIENNSTLLLDQHNNHCSNRLWSLL
DISARLSGPLLSYHPRALIQSLYSGEWKRAYDILQHLVQSMKASKMLNTMVECTSCSKSC
HDIPEFPLSQYFTDTPSSDISNKGLPWGDNKISTTFNLMSPSISFSYMESDLGVTTSSAS
HMPEINQLLDKDFGIFAISDSEKIQILAVSDLLGEITDQKRASPYKSLDEAGRRFWIAVQ
FQRLYLLRRSGDSSSAEGCHVDSVSISWAFQSDCQDDLLNYVLPAESTWSEMRNLGIGLW
YTNVSQLRTRMEKLARLQYLKSKDPKDCALLYIALNRIKVLVGLFKVSRNEKDKRLYEFL
CRNFEEEKNKAAALKNAYVLLGRHQWELAIAFFLLGGDTSSAINVCAKNLQDEQLAIVIC
RLVEGSGGPLERNLISNVLLPGAAEKGDHWLSSLLEWMLGNYSQSVKKLFGFHPKILFDE
SNTLGGQNVFADPELGQYCAILATKNTFRNCVGEAPSAKLSKLSFAIAACALNKCGLPLE
ALEYLSSKSSIDDKESTGSPYCEDDKILDGILNPFNASSNWLSASVISDLESNLKVTMAS
KYLSRMLRNHSLCSKCSLPLTKDKFLKEPNSHAIEELTRDVTAAISIFGKRFSLQFSDIA
EKILTFSCNDGLLFLAYVLLVGSRSPYGGTDSHGLEGCNLRPIDYLFLVSCKESFNFLTR
YVVSCCFMCSVLNVEFTNITTCTPTENKKYIIATLSHFLSTSRLLLKHDYSRTSALENTS
ISTVMDLLEYSIEFSFSWLCRDIKALIIMINPVLGASVNEESFQALLDRLMQAAHWKSHG
ISINTERIMPNGSLDKRQQESEDSSLSIYEKWHLIDSSLWIALSSFMKHHLTEFIGKESL
KLEASTTSVAANFVIDSLNFVSSSLVKLHASFFRQKSAKNLHPSVLFWLEYMSCQPRSNR
TSCEYIVQHANTENMDVLFNVLWDISANPVDICTAFVTEEVNSFPLNSRKPSRSWRDMVR
STKAECGNNFSERNGGETKCSVSSKNNDKEQGFIDKVSPDVETSVEPKRKYLIEQNDFQS
PRELLRRNGELLEAICLNSINEQHAAIATNRKGLVFFNWYDKQQGKKPAEYIWSGSDWPS
DGWACSESTPTTTPTSAFISPSVGLSRRRGSHLGSDGATIGLGSLAKPGRDLTGGGAFGI
PGYAGIGASGFGWGEPDEFEDFIDPPATLENIHSRALSRHPSLPLLLVGSSNTHVYLWEF
GKDSARATYGVLPAANVPPPYALASISAVQFDHYGQRFATAALDGTISTWQVEVGGRSNV
HPTESSLCFNSHASDVAYVDASGSVLAAAGCNSNGANAVIWDMLAPPATCQNSIVCHEGG
ARSLSVFDNDLGCGSISPLIVTGGKSGDVALHDFRFISTGKSKHHRTSVGGSYSGMIWHI
PKAHLGTVTSVSTIPNTTLFLTGSKDGDVKLWDAKNSQLVFHWQKMHERHTFFQPTSRGF
GGVVRAAVTDIHVLSNGFVSCGGDGSVKLVQVKNDFAAIHQH
NT seq
7329 nt
NT seq
+upstream
nt +downstream
nt
atgggggacgcactgccgcagcttccgcttgccctccacccgccgcatctgatccccccg
gcgcccacccccgatcaccgcgctttatccttcctccccgacctcggcggccttccctgg
gtcgcctacgccgccggctccctcctcgtcgtctcccacctcccttcccctccccgtacc
agcggaagctgcactgccgaggacgaatccccattcttccgccaagtcatcgacctccac
gcccccgtggccgccgtcgcctggtgcggccgcgggggaggtgagctcgccgccgcggct
ggcaacactgtctctatcttccagcctgcgccctcgtcttccgcaggttcgttcagctgg
ctcctgagatgggccatcaccgagactttcgcagtcacggccgtcgcctggacgggctcc
ggcgatggcattgtggcggtcggtggggctgtttccatgtgggccagggcggagtcctcc
tggcagctcgcttggaggtccatcccggaggtgccacagtctctcgcctccgctacccac
tttgtagatggccctgtcgtggccgcatcagctgctgctcctgccgcgggcaatgtgcct
gttctggtatttctgaatgatgccaaattgggtctggagaaagctgagcttccacatcca
ctgcctgtctccatgatccagtggagacctcgagttttatgtgtcaacgatccttctgaa
gtgcggagagagatcctcatgacttgctgcttggatggaactgcccggctatgggctgag
gatgaggtgatcaggtcaaacaagcagcgtgcttcgcacagatctttcagtgttgttgca
gtaattgagttgaacaacgttctaaatggagttcttggagttgatataactatgagatgg
gtggtagaaacgggcagtctcatattgcgagacgaagaaggtaagttcaagttgttttca
ggcgattctgagcagaatcaggtcggcaaatgtgagtggctagtaagcgttggtcctggg
cattcttccaacttttgggctgttcattgtcttgatgatgtctgtccaccaaggtaccca
cggattacactatggaaacagagtaaaccaaaggcttgggaggagcatgctgttaacctg
ggtccccgcaaacctatattatcatcaatttttgttgatgctattatatcaagaaggata
tgttctggcccacctacaacatgctctttgcttcatttgctgcctgacaattcattcatt
tggtcttgcctgtcttttggtctgtcatcagtttctgggagttatacttcgagtgattct
tctaagagtatttcatgttgttcaaccaaaactattaatcaagatggacataagggtacc
atcatacaggtgtctgtccatccatatagctgcgaaatagagcttgctgtttctatggat
tctagcagaatgctatttctctggtctctttcaaccttatcaactctcatgccaaccttg
cacgcacctacttatcctttatggaagctcctccacaaatttgatctgtgtgacatttct
gaagatgtgcagtactcatgtctgtcttgggctccttctgtttttcgtgataacaggttt
cttgtcctgggaggtgaaaatggagccgattgttttgttttcagaattccaaaagaaggt
gttgtttcacatcacaagatgttcacaattcctttccttgtagggagtaatgtagaaggg
ccacctgacagcattcataccatacctttagcttctaactgcaacgacccctttttcaat
aacagcttcctattagtatgcatatggcggaagggctttcaagctttttcatggaaagta
gtcctgcattcaaaaaatcatcatccagaaggagggtgtttatgtggtttttctgccagc
tctctttccactgcagatcaaaagagacatgttacttacatccgcagtgaaatgttttca
gctgtcatttatgaaggttcttcggttttccctgctggcctggatggagaatatcctacc
tgcatttctgttatgtcgctgaacaatactgtattacctctaaaacagcaggacccttct
ggatcttccccaggttatcatattgctaccgggtcctctgatggcactgtgaaactttgg
aagttttctggtgcagataaccctttgcagactggaacagagagcatcatctgggaacta
gttggcatgttcggtgcgcatcatggaccaattagtgcaatttcactatccagatgtggt
agaattgctactgtcggcagagatgttcagaagaacagtacctccattcatatttgggaa
gcagtaaaacttatgcgagatgggtgttttctccttgaagatgcactaatgattcaaagc
cctgttgttggtttaaattggctatctttaggtgatggtagaattttacttgcagtctat
tttcttcacgagttgcatatatactcccataagcacccttcctttcagaatgtgctgcac
agtgcaaatttgaaagataaacatctttggagctgtattacagtagcccattctcatcat
ggtgttgctggcttccattgggggccaagggcgacaattgtgcttgttcataagaatcat
ctttcactcttcagttcatggttagtaagaggaggaaatgaacatattacccaaaaaggc
gtttgttctgctacaaatgtgcataaagagttgccatgtactgtgcattttaatgaaact
atctttgatacatttgggttgtcagaaaattacagcaacatagataccattgagaacaac
agcacactgctattagaccaacacaataaccattgttctaatcgtttgtggagcttgttg
gatatatctgctagactgagtggacctttgctatcatatcatccaagagcacttatccaa
tctctttactcaggtgaatggaaacgcgcatatgacattctgcagcatcttgttcaatcc
atgaaagcaagtaaaatgctaaacactatggtggagtgcacttcatgcagtaaatcatgc
catgatatccctgaatttcctttgtcacagtactttacagatacaccatcaagtgacatt
tctaacaaagggttaccgtggggtgacaataaaattagcacaacatttaatttgatgtca
ccatcaatttcattttcttacatggagagtgatttaggtgtcactacttccagtgcatct
cacatgccagagataaatcagctccttgataaggacttcggcatatttgcaataagtgac
agtgagaaaatacagatacttgcagtttctgatcttttgggtgaaattactgatcagaag
cgtgcttctccctataaaagccttgatgaagcaggacgaaggttctggattgctgtgcag
ttccaacgcctgtatctgcttaggagatctggagattcatctagtgctgaagggtgccat
gttgattcagtctccatttcatgggccttccaatctgattgtcaggatgatcttctcaat
tatgttcttccagcagaatcaacttggtcggagatgcgaaaccttggtataggattatgg
tataccaatgtgtcccagctaaggaccaggatggaaaagttggcaaggttgcagtatctt
aaaagcaaggatcccaaggattgtgctctgctctatatagcattaaacagaataaaagtg
ttagttggcctattcaaggttagcagaaatgaaaaggataaacgtctctacgagtttctc
tgtagaaactttgaggaagaaaaaaacaaagccgctgctcttaaaaatgcgtatgtatta
ctgggaaggcaccaatgggagcttgctatagcatttttcctgcttggaggtgatacttcc
tcagccatcaatgtttgtgcgaagaaccttcaagatgaacagcttgctattgtaatttgt
cggcttgttgagggatctggagggcccttggagcgtaacctcatttcgaatgtgctgctc
cctggtgcagctgagaaaggagaccactggctttcaagcctgcttgaatggatgctaggg
aactattctcagtcagtcaaaaaattatttggcttccatcccaagatactgtttgatgaa
tccaacactcttggtggtcaaaatgtgtttgcagacccagaattgggtcagtattgtgca
atccttgcaacgaaaaatactttcagaaactgtgttggtgaagctccatctgcaaagttg
tctaagctttcatttgcaatcgctgcatgtgccttaaacaaatgtggactacctcttgaa
gcacttgagtacctgtcttctaaatcaagcatagatgacaaggagagcaccggctcacca
tattgtgaagatgacaagattcttgatggaatactaaaccctttcaatgcttcttctaat
tggctttcagcatctgtcattagcgatcttgaatcaaacctcaaagtaaccatggcttca
aaatatttgtcacgcatgctgagaaatcactctctctgttcgaaatgcagtctaccttta
acgaaagataagttccttaaagagcccaacagtcatgccattgaagaacttacacgtgat
gttactgctgcaatatcaatatttggtaaaagattctcgctccaattttctgatatagct
gagaagatccttaccttctcttgtaacgatggtttattatttcttgcctatgttctgtta
gtgggtagtagatcaccatatggtggaactgatagtcatggtcttgaaggttgcaatctc
cgtccgatcgactatctgttcttggtgtcatgcaaggagagttttaattttctcactcga
tatgttgtctcctgctgtttcatgtgttctgttcttaatgtggaattcaccaatattacc
acatgcacacctacggagaacaagaaatacattatcgcaactttatcacatttcctgagc
actagcaggcttctcctgaaacatgactacagtagaacttctgctctggagaacacatct
atatctactgtgatggatctccttgagtacagcatagagttctctttttcttggctatgt
cgtgacataaaggcattaattataatgatcaatccagtgttaggtgcatctgtcaatgaa
gagtcctttcaagcactattagatcggttgatgcaagctgcacactggaaaagtcatggt
atatcgattaacacagagcggataatgccaaatggttcattggacaagagacaacaagaa
agtgaggattcaagtctctcaatttatgaaaagtggcatttgatagattcttccttgtgg
attgcattgtcatccttcatgaaacatcatttaacagagttcattgggaaagagtcactt
aaacttgaagctagcacaacttcagttgctgcaaattttgttattgattccctgaatttt
gtatcatcttcactagtaaaactgcatgcatcatttttcagacagaaatcagcgaagaat
ttacatccgagtgtgcttttctggttagaatatatgtcgtgtcagccaaggtccaacagg
actagctgcgaatatatcgttcagcatgcaaatactgagaacatggatgtgttgtttaat
gttttgtgggacatatctgctaaccctgtggatatttgtactgcttttgtgactgaagaa
gtgaattcctttccgctaaacagcagaaagcccagcagatcttggagggatatggtcaga
agtacaaaagccgagtgtggaaacaatttttctgaaagaaatggaggagaaactaaatgc
agtgttagctccaagaacaatgataaagaacagggatttattgacaaggtttctcctgac
gttgaaacctctgttgaacctaaaaggaaatacctgattgaacaaaatgactttcagagc
ccaagggaacttcttaggagaaatggggaacttcttgaggcaatatgtctcaattcaatc
aatgagcaacatgctgctattgctaccaaccgaaagggtcttgttttcttcaattggtat
gacaagcaacagggcaagaaaccggcagagtatatttggtcaggatctgattggccatca
gatggttgggcttgttctgaatctacgcctaccactacacctacttcagcttttatttca
cctagtgttggtcttagcagaagaagaggatcacatcttggttcagatggagcaactatt
ggtttaggttctttagcaaaacctggaagagacttaactggtggtggagcatttggaatt
ccaggctatgctggtattggggcctctgggtttgggtggggtgaacctgacgaatttgag
gatttcattgatcctccagcaacacttgagaacatccattcaagagcactatcgcggcat
ccctctttgcctttgttgctagttgggtcaagcaatacacatgtgtatttatgggagttt
ggtaaagatagtgcaagggctacatatggtgttctccctgccgctaatgttccaccacct
tatgcacttgcttccatatcagctgttcaatttgatcattatgggcagcggtttgccact
gctgcattggacggtacaatttctacatggcaagttgaggtgggtggaagaagcaatgtc
catcctacggagtcatccctatgctttaacagccatgcctcggatgttgcatatgttgat
gcaagcggatccgttcttgctgcagctggatgcaattcaaatggtgcaaatgctgttatc
tgggatatgctagctccaccagccacatgtcaaaattctattgtgtgtcatgaaggagga
gctcgttctctttctgtgtttgataatgatttaggctgtggatccatctcaccgctgatt
gtaactggtgggaaaagtggagatgtggcattgcatgatttccggtttatttctactgga
aagagtaagcatcacagaacttctgttggtggtagctacagtgggatgatttggcatata
ccaaaggctcatttaggaactgtcaccagtgtatcaaccattccgaataccaccttgttc
ttaactggaagcaaagatggagatgtgaagctttgggatgctaaaaattcccagttggtc
ttccactggcaaaagatgcatgagcggcataccttttttcaaccaacatccaggggcttt
ggtggtgttgttagggctgccgtaacagatatccatgtcttatctaatggttttgtttca
tgtggtggggatggctccgtgaagctagtgcaggtaaagaatgattttgctgcaatacat
cagcattag
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integrated database retrieval system
