Brachypodium distachyon (stiff brome): 100827521
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Entry
100827521 CDS
T01717
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03410
Base excision repair
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
bdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100827521
03410 Base excision repair
100827521
03420 Nucleotide excision repair
100827521
03430 Mismatch repair
100827521
03440 Homologous recombination
100827521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdi03032
]
100827521
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100827521
Enzymes [BR:
bdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100827521
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
100827521
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
100827521
MMR (mismatch excision repair)
DNA polymerase delta complex
100827521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
100827521
NCBI-ProteinID:
XP_003577757
UniProt:
A0A2K2CPR4
LinkDB
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Position
4:28297943..28310443
Genome browser
AA seq
1135 aa
AA seq
DB search
MAGTPIPPSQPSRLSSPHPHPLSHSRSTAMSSGGRGGKRRTAPPQAPSAAAAKRAHPMPT
TGTPQPPPPAPPAATAEEEDMMDEDVFLDEAILAEDEAALLLLDRDEALASRLSRWKRPA
LPADLVSGCSRSVAFQQLDIDYVIGESHRELLPNTSGPAAIIRIFGVTKEGHSVCCQVHG
FEPYFYISCPSGMGPDDISRFQQALEVRMKESNRSSNVPRFVKRVDLVQKQTIMHYQTQK
SQSFLKIVVALPTMVASCRGILERGITIEGFGSKSFLTYESNILFALRFMIDCNIVGGNW
IEVPRGKYRKAARIMSYCQLELDCIYSDLVSHAAEGEYSKMAPFRILSFDIECAGRKGHF
PEPTHDPVIQIANLLTLQGEAQPFVRNVMTLKSCSPIVGVDVMSFDTERDILLAWRDLIR
EADPDIIIGYNICKFDLPYLIERAEVLKIVEFPLLGRIRNSRVRVRDTTFNSRQYGVRES
KDVTVEGRVQFDLLQAVQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSETRR
RLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQR
NLVIPNIKGQGSGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAHNLCYCTLVPP
EDVRKLNLPPESLYKTPSGEIFVKPELQKGILPEILEELLTARKRAKADLKEAKDPFERA
VLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGG
YEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKVYFPYLLI
SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVK
NTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYV
IIKAAKGAKAYEKSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPILKNASRELLHGS
HTRAVSISTPSNSGIMKFAKKQLTCLGCKAVISGPNQTLCSHCKGREAELYCKTVANVSD
LEMLFGKLWTQCQECQGSLHQDVLCTSRDCPIFYRRRKAQKDMAEARVQLDRWDF
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaccccaattcccccttcccagccttcccgcctctccagtccccacccacat
cccctctcccactcccgctctacggcgatgagctcaggcgggcgcggcggcaagcggcgg
acggcgccgccccaagcgccctccgcggcggcggcgaagcgggcccaccccatgccgacc
accggcaccccgcagccgccgcctccggccccgccggccgcgacggcggaggaggaggac
atgatggacgaggacgtgttcctggacgaggccatcctggcggaggacgaggcggcgctt
ctgctgctcgaccgcgacgaggccctcgcctcccgcctctcccggtggaagcggcccgcc
ctccccgccgacctcgtctccggttgctcccgctccgttgcttttcagcagctggatata
gattatgttattggcgagagccacagagaattgctccccaacacttccggacctgcagct
ataatcagaatttttggtgtcaccaaagaaggtcacagtgtttgctgtcaggtgcatgga
tttgagccatatttctacattagctgcccatcagggatgggtccggatgatatttcacgc
ttccagcaagcacttgaggtgaggatgaaggaatcaaatagaagtagcaacgtgccaagg
tttgtgaagagagttgatcttgtgcagaagcagacaattatgcattaccagacacagaaa
tctcagtctttcctcaagatagtagttgccctacctacaatggttgctagttgtcgcggc
atcctggaacggggcataacgattgaaggctttggttcgaagagtttcctgacatatgaa
agcaacattctttttgcccttcgctttatgattgactgcaacattgttggtggcaattgg
attgaagttcctcgtgggaagtataggaaagcagctcgcatcatgtcgtattgtcaacta
gagctggattgcatatattccgatttagtaagccatgctgctgaaggggaatactctaag
atggccccatttcgcatattaagttttgacatagaatgtgctggtcgcaaagggcacttc
ccagaaccaactcatgatcctgttattcagatagccaatttactgacgcttcaaggagaa
gcccaacctttcgtacggaatgtcatgacccttaaatcatgctcacctattgttggagtc
gatgtgatgtcatttgacacggagagagatattctacttgcttggagggatttaatacgc
gaggcggatcctgatattataattggatacaatatctgcaaatttgatctgccctatctt
attgagagagctgaagttctgaagatagtggagtttccgctacttggtcgaatcagaaat
agccgtgttcgtgtccgtgatactaccttcaactcaaggcaatatggtgtgcgtgaaagt
aaagatgtaactgtggagggaagggtacaatttgatcttctgcaggctgtgcaaagggat
tacaagctgagttcttattcgctgaactctgtatctgcacattttcttggggagcaaaaa
gaagacgttcatcattcaattatatctgatcttcaaaatgggaactcagagacacgaagg
cggctggcagtctattgcttaaaggatgcttaccttccgcagagactcttagataaattg
atgtacatctacaactacgtagagatggcgagggtcacaggggttcccatttcatttctg
ctctcgagaggacagagcattaaggtcctctcgcagctactcaggaaagcaaagcaaaga
aaccttgttataccaaacataaagggccaaggttctggacaagatacctttgagggtgca
actgttttggaggcaagggctggattttatgagaagcccattgcaactttggactttgct
tctctatatccatccatcatgatggcacataacctatgctactgcactctggtgccccct
gaggatgtccgtaaactcaacttgcctccagaaagcctgtacaaaaccccatctggtgaa
atatttgtgaaaccagaactgcaaaagggtatacttcctgaaatccttgaagaactgttg
actgctcgaaaaagagcaaaagcagatctgaaggaagcaaaagacccatttgaaagggcg
gttcttgatggtcgtcagcttgccctaaaaataagtgcaaactcagtttacggttttact
ggagctactgttggtcaattgccctgtttagagatttcttcaagtgtgacaagctacgga
agacagatgattgagcatacaaagaagcttgttgaagataaattcacaacacttggaggc
tatgagcataacgcagaggtgatttatggagatactgattctgtgatggtacagtttggt
gtttcgacagttgaggacgcaatgaaattgggcagagaagctgcagattatattagtgga
acatttattaagcccatcaagctagagtttgaaaaagtctatttcccatatctgctgatc
agcaagaagagatatgctggtttgtactggacaaatcctgagaaatttgacaaaatggat
acaaaaggtattgaaacagtaagaagggacaattgtttgttggtaaagaacctggtaacc
gagtgccttcacaaaatactagtggaccgagatgttcccggggcagttcaatatgttaag
aacaccatatctgatctattaatgaaccgtgtggacttgtcacttctagttataacaaag
ggtctgactaaaacaggagaagactatgctgtaaaagctgcccatgtagagcttgctgag
aggatgcggaagagggatgctgctactgcaccaactgttggtgaccgtgttccttatgtt
ataataaaagcagcaaaaggggcaaaggcatatgagaagtcagaagatcctatttatgtt
ctggataataacataccaatagatcctcaatactaccttgagaaccaaattagcaaacca
ctgttgagaatatttgaaccaattctgaagaacgccagcagagaactgcttcatggaagt
cacaccagagctgtttcaatctcaactccatcaaatagcgggataatgaaatttgctaag
aaacaactgacttgccttggatgcaaagctgttataagtggccccaatcaaacactttgc
tcacattgcaaggggagagaagcagaattatactgcaaaactgtagcaaatgtttctgat
ctggagatgctctttgggaagctatggacacagtgccaagagtgccaaggctccctacac
caggatgttctctgtaccagtcgggactgccctattttctaccggcgaagaaaagcgcag
aaagacatggctgaagctagggtgcagctcgatcgctgggacttctga
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