Brachypodium distachyon (stiff brome): 100827891
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Entry
100827891 CDS
T01717
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100827891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bdi04131
]
100827891
Membrane trafficking [BR:
bdi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100827891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
Beta-prop_EML_2
Beta-prop_EML
VPS8_N
TPR_VPS8_2
WD40_CDC20-Fz
WDR55
Beta-prop_HPS5
Clathrin
ANAPC4_WD40
TPR_Vps41
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
zf-RING_Vps41
Beta-prop_WDR90_POC16_2nd
zf-RING_2
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
100827891
NCBI-ProteinID:
XP_010233745
UniProt:
A0A0Q3HHY9
LinkDB
All DBs
Position
3:complement(1509367..1522882)
Genome browser
AA seq
1917 aa
AA seq
DB search
MASQPPTQLQQQEIDVDNLLPSSPASSAASDADADHRRAVDDLLLLLSSSDSDSDEPSRS
SSSPSTSLKPLPRIQAPPPRQLPKPSPPPSPSPSASDSPRRSTSASPPSATLSSLVTRTF
SNSAASSSRPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRTASAPVDKSL
DEGTGSEASEGLPSTGNLEAEVAAEKVSAEVVAGVTEETVGGSKVEELEDGKHGDVGIEV
NSEPAESVRAGDVDSVAAGIVDEHEQIGGENLAETVQVGSQVGFVDEGSGDEQIRDENSM
ESDEIVDEVGSVSEENSDDEQEVQVSDNAVEEEVESVDIIDKVIEERLEISRKAEKITEK
KLKVSMKPLEWAEELEKRQASFGQHWEEGAAAQPMRLEGIGKGQPAIGYMQIEVDNPITR
AMASPSFRQDHGSPQVLAVHRSYIAMGMSSGAVIIVPSKYSSHQADDTDAKMLFFWNQGE
KTQSPVTAMCFNPQGDLLLVGYGDGHMTIWDVQKATAAKVIHGEHTGAVVHVCFIRQSKA
ITGDSKGLVLLHTFSIIPVINRLTVKGTQRLFDGNTGIVLSACPLLVDESLYSSNSSTQG
NITSSSSGGLGSMMGGVVGVDSGWKFFNEGSSPVEDGVTVMFIMHQHALVVRLRTNIDHV
DHIETFSRPEGAREGSIAYAAWKYTASSSDSPSVDEDRVSWLALAWDRQVQVAKFVKSKM
IRHKEWKLDSSAVGVAWLNDQMLAVLNLRGQLCLFSKDGSELRRTIFILDGFVFDDSILY
HTHFLNRFGNPERHFKNSVAVRGATVYILGPNFLTVSRLLPWKERIEALKRAGDWMGALD
MAMKLYDGHTQGVVDLPRTVDSIREAIMPYLVELLLSYIGYVFEYISIALSNHTGKGGGA
DDLVDTDRSLLTQREEQYARVGGVAVEYCVHIGRNDILFDTVFSKFAAAQSGGMFLEVLE
PYILKDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDISSLDFNQVVRLCREHGLYG
ALIYLFNQGLNDFRTPLEELLSVIQSATRKDATSTCYRMLVYLKYCFQGLAFPPGHGIIP
RAHLHSVRKELLQFMLEESKMLTSEVFKGFNSSCGKCPNICYLLWMDTEATLEVVKCAFA
QESFEPTSGILDASVPTDEGDTNTGSPESQNILLQSVVDTIIDIVGLENEATHSIFAGTA
ESENSEFWPSVNDLGYIIEFVSFFVCHKRANTSQRVLRHIVKYLTLSNTQSYDDKKLPTQ
KEEEVLQLFNVVPQTDWNSDYVLHLCLDAHFHQACGLIYAARDQNLAALDSYMKDIVEPF
HAFIFINKKLLQLAGDEVLSFRSTVISRFPELVNLSRECAFVLVIDHFHNEIQQMLAELH
SDHCSLFLFLKTAIEVHLSGKLDFSKLTARNDKIVERQYFSGELEDYLQRLSNLPKLFDR
NPVSLTDELVELYLELLCQYEPRSALRFLETYDSYRLERCLHLCLDYGVTDAAAFLQERV
GDVGSALALVLAGLDEKISQFISSVENTFSRISPKSISEIEQPDVVLKMSEAHPVLDTLR
ASIGLCQRNSQRLDPEESQLLWFQLLDSFSEPLKKLYGGKVVNGKGGRSEGGETTNGYPK
GNGQMRISTYEKCLNALRRVFSQFVGEIIEAMAGYIPLPAIMAKLLSDNGSQEFGDFKLV
IHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCVCNCSLSKEGA
ISAVRVFSCGHATHLHCESEQSKSSNRDSKDGCPVCLSTSNTQARNKSSIISENGLTRYS
VVENEVSHGIHHVHETDHAERSRGLQHMSRFEILNNLQKAHKTFHIETVPPLRLSPPAIY
HEKIQKRVTFVGESSRHSVRTEKPQKIWQMKEPKLKKSGNWLPAKTSIFSSDKNQVR
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccagccgccgacgcagctgcagcagcaggagatcgacgtagacaacctcctc
ccatcatctccggcctcctccgcagcctccgacgccgacgccgaccaccgccgcgccgtc
gacgacctactcctcctcctctcctcgtccgactccgactccgacgagcccagccgtagt
agcagcagccccagcaccagcctaaaacccctaccccgtatccaagccccaccaccgcgg
cagctccctaaaccttcccctcctccttccccttccccttccgcctccgattccccgagg
agatccacatccgcctcgccgccgtcggcgacgctctcctccctcgtcaccagaaccttc
tcgaacagcgccgcttcctcgtcgaggccactcccctcgctcttccggggcgtccgcccc
agccccaagcccggcgccgccctcgccgcggctgccgccgcgtcccgcgccgttctcacc
ccgcacgccgcggcgatcaagtcgcggcgcaccgcctccgcgcctgtcgataagagcctc
gacgagggcaccgggtccgaagcctccgaggggctcccttctactgggaatttggaggca
gaagtagcagcagagaaggttagtgcggaagtggttgctggggtgaccgaggaaactgtc
ggtgggagtaaggttgaagaattggaagatggcaagcacggggatgttgggattgaagtg
aattctgagcctgcggaatcggtgcgggctggggatgtcgattctgttgctgccgggatt
gtcgatgagcatgagcaaatcgggggcgagaatttggcagaaaccgttcaagttgggagt
caagttggatttgttgatgaaggaagcggtgatgagcagattagagacgaaaattcaatg
gaatctgatgagattgtggatgaagttgggtctgtttccgaggaaaactctgacgatgag
caggaagttcaagtatctgacaatgcagtggaagaggaagtggaatctgtggacatcatc
gataaggtgattgaagagaggttggagataagtaggaaggctgaaaaaatcactgagaag
aagctgaaggtgtcgatgaaaccattggagtgggcagaggagctcgagaagcggcaagcc
tcatttgggcagcactgggaagagggagcagcagcccaacccatgcgcctggaggggatt
ggaaagggccaaccagctattggttacatgcagattgaggtggacaacccaataactcgt
gccatggcctccccgtcttttaggcaggaccatggctctccccaggttttagcagttcat
aggagctatatagcaatgggaatgtccagcggagctgttatcatcgtcccgagcaaatat
tccagccatcaagctgatgatacagatgcaaagatgctgttcttttggaaccaaggtgaa
aaaactcaatcaccagtgactgccatgtgctttaacccacaaggtgatcttctgctagta
ggatatggtgatggtcatatgacaatctgggatgtacagaaggccacagcagctaaagtg
atacatggtgagcatacaggagccgtagtgcatgtttgtttcatccgccaatcgaaagcc
atcactggtgattccaaagggcttgttctactgcacacattttcgattatacccgtaatt
aatcgcttgactgtcaagggaacccagcgcctttttgatggaaatactggaatcgtgctc
tcagcctgtcctcttctagtggatgaatctttatattctagcaactcatctacccaaggg
aacataacaagttcctccagtggtggtcttgggagcatgatgggaggcgtagttggagta
gattctggatggaaatttttcaacgaaggttcttctccagtggaggatggtgttacagtc
atgttcattatgcatcaacatgcccttgtggttagactgcgtaccaatatcgaccatgtt
gaccatattgagaccttttctagaccagagggagcacgggaagggtccattgcttatgct
gcatggaaatacacagcatcctccagtgattctccatcagtagatgaagatcgagtatca
tggcttgcgcttgcatgggaccgtcaagtacaagtggcaaagtttgttaaatcaaagatg
atcagacataaggaatggaagcttgatagttcagccgttggtgttgcttggttaaatgat
cagatgttagctgtccttaatttgagagggcagctgtgtttgttctcaaaagatggcagt
gagcttcggagaaccatctttattcttgatggttttgtctttgatgacagcatactgtac
catacacattttttgaacaggtttggtaaccctgagaggcattttaaaaattcagtagca
gtaagaggtgctacagtatatattcttggcccaaactttcttacagtttcacgacttctt
ccttggaaagagcggattgaagcactaaagagggctggtgattggatgggtgcattggac
atggctatgaagctttatgatggtcatacacagggtgtcgttgatctcccgagaacagtt
gattctataagggaagccataatgccatatttagtagagttgctgctgtcatatataggt
tatgtctttgagtatatttcaattgcattgtcaaaccatactggaaaagggggaggagca
gatgacctggtagacactgatagatcactgctgacacagagagaggaacagtatgctcgt
gtaggaggggttgcagtcgagtattgtgttcatattggacggaatgacatcctttttgat
accgtcttctctaagtttgctgctgcacaaagtggaggtatgtttctggaggtactagag
ccctatatattgaaagatatgctcggttctttgccccctgagattatgcaagcgctagtg
gagcattatagtggcaaaggatggttgcagcgagttgagcaatgtattctccacatggat
atttcttcactggattttaatcaggtagtcagactgtgtcgtgagcatgggttatatggt
gctctaatttatttatttaaccaagggttgaatgatttccgcacacctctagaggaactt
ctatctgtcatccagagcgctactagaaaagatgctacttctacttgctacagaatgctt
gtttatctgaagtattgcttccagggcctagcatttcctccagggcatggaataattccc
cgagcccaccttcattcagtgagaaaagaacttctgcagtttatgcttgaggagtctaag
atgctcacttctgaagtatttaagggttttaattcttcttgtggaaaatgcccaaacata
tgctatctactatggatggatactgaagctactttggaagttgtcaagtgtgcttttgca
caagagagttttgaacctacttctggtattcttgatgcatctgtccccacggatgaaggt
gatactaatactggaagcccagagagtcaaaatattttgttacaaagtgtagtggacacc
atcattgatattgttggtttggaaaatgaggcaacccattccatttttgcgggtactgct
gagtccgaaaattcagaattttggccttcagtaaatgatcttggttatataattgaattt
gtgtccttttttgtttgccataaaagggcaaatacgtcacaaagagttcttaggcacatt
gttaaatacctcactttatccaatactcagtcatatgatgataaaaagttgccaactcag
aaagaagaagaagttcttcagctcttcaatgtagttcctcaaactgactggaattctgat
tacgtgttgcatctctgtttagatgctcattttcatcaggcttgtggcttgatatatgca
gccagagatcaaaatttggctgctttagatagttacatgaaggatatagtggaaccattc
cacgcttttatcttcatcaacaaaaagttacttcaattggcaggtgatgaagttttatcg
tttcgttccacagtgatatctcgtttccctgaactagtcaatctaagcagggagtgcgca
tttgtcttggtcattgatcattttcataacgagatccagcaaatgttggcagagcttcat
tctgatcactgtagcctctttctgttcttgaaaactgcaattgaagtacacttgtcagga
aaacttgacttcagcaagcttactgccagaaacgataaaattgttgaacgtcagtacttc
tctggcgaacttgaagattatctgcagaggttatcaaatcttccaaagctgttcgaccgc
aatcctgtttctttgactgacgagttagttgaactctatctggagcttttgtgtcagtat
gagccaaggtcagctctgaggtttctggagacttatgatagttacagattggagaggtgt
ttgcatctttgtctagattatggagttacagatgctgctgcatttctgcaagagagggtt
ggtgatgttggcagtgcactggcacttgttctagctggacttgatgagaaaattagccaa
tttatctcttctgtggaaaatacgttctctcggatatcccccaaaagtatttctgaaatt
gagcaaccagacgttgttctgaaaatgagtgaggctcatccggtgcttgatacgttacgt
gcctccataggattgtgccaaaggaactcacagcgcttagatccagaggagtctcagtta
ctttggtttcaactacttgactcattctcagagccgctgaaaaaattgtatggaggcaag
gttgtaaatggaaaaggtggtcggtccgaggggggtgaaacgacaaatggctacccaaag
ggcaatggacaaatgaggatttcaacttatgagaagtgcttgaatgctctgcgaagagta
ttttcacaatttgttggagagataatcgaggcaatggctgggtatatacccctaccagca
atcatggcaaagctattatctgacaatgggagtcaagagtttggtgattttaaacttgtc
atacataggatgctgtctatgtatctttatgaaaaaagaatactggaaacagccaagtca
gttatcgaggatgattcattctataccttgagcttactaaagagaggggtttgtcacgga
tttgctccacagacttttgtctgctgtgtatgcaactgctcactttctaaagaaggtgct
atttcagcagtacgagtattcagttgtggccatgcaactcatcttcactgtgagtctgag
caaagcaaatcatcgaatagggattctaaagatggatgtccagtttgtctctcgacgagt
aacacacaagcccggaacaaatcatccataatatctgagaatgggctaaccaggtattct
gtggttgaaaatgaagtatcgcatggcatccatcatgttcatgaaacagatcatgctgag
agatcccgtgggcttcagcatatgtcgcggtttgaaatactgaataatcttcagaaagca
cataagacttttcatattgaaactgtacccccattaagactttctccgccagccatatat
catgaaaagatacagaagagagtcacttttgtgggagaatccagtagacattcagttaga
actgaaaaaccgcagaaaatatggcaaatgaaggagccgaaattaaagaaatctgggaat
tggcttccagccaagacaagtatattcagttctgataagaatcaagtgaggtag
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integrated database retrieval system
