| Entry |
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| Name |
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
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| KO |
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| Organism |
bdi Brachypodium distachyon (stiff brome)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:bdi00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100828356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:bdi03019]
100828356
Enzymes [BR:bdi01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100828356
Messenger RNA biogenesis [BR:bdi03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100828356
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5:complement(16547395..16552034)
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| AA seq |
729 aa
MQSSRRLARAPPPRTLFTRLYSSSSSLLPANGAGDGAGSSRVGGVAVKQVTRGNLAEALE
ELRARVRDAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAQRFAALQLGVCPFR
WDPAKSAFVAHPHNFFIFPRKELPDDISSHEFLCQTTSIDFLAKYQFDFNTCFHEGISYL
SRAQEEEALQKLNVLYHDGIASPNTSEEEDVPLRSTADLLFTERMKIKFKEWRDVIISNP
RMDNHWLECNKFSTHQFQTVFFKMHPAILLNGFTSHQLKLIQQVLRKDFKDLMYISTFGE
DNTSEKRVVYTDDSNDSVSLMKDLQEDLLRSREARVKSAVGIRHVIDLLASERKLIVGHS
CFLDIAQVYSKFIGPLPSTVKEFALGIHKILPYIADTRHLMSASDSVQYLMRQKSKSLSS
VFSLLCPAFHSTVAEPSTLSPVRIEVEADETMLSCFASGAKHEAGYDAFMTGCVFAQLCD
HLDVKFEHLPPRDNLAMNNKLQKYINLLSPSFNSGTSLDLSTGMERPDTGYKRRYPTVLY
DNVVLIWGYQSELRPRDIKDCICKVFGPASVTTIFSIDSTAVLVQFSKQESVNDFMDLKA
ALEKTDSAISVLHPLSTILEGGKTRAANYDTYRDICGSSVSKYFFADQAEAVCSSSKSLL
KCENIDAADTPGVILNESILDETIPTSEKHAGGTKNVSKKEDDSEISCQDILDALQDGKA
LFDKRTRST |
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| NT seq |
2190 nt +upstreamnt +downstreamnt
atgcagagcagccgccgcctcgcccgcgcgccgccgcccagaaccctgttcacccgcctg
tactcctcctcctcctccttgctgcccgcgaacggcgccggggatggagcaggaagcagc
agggtcggtggggtcgcggtcaagcaggtgacgcgggggaacctggcggaggcgctggag
gagctgcgggcgcgggtgcgcgacgcggcgttcgtggggctcgacctggagatgagcggc
gtcacgagcgcgccatggcgggacaccttcgagctcgaccgcgccgacgtccggtacctc
aagctccgcgactccgcgcagcgcttcgccgcgctacagctcggcgtttgccccttccgc
tgggaccccgccaagtctgccttcgtcgcccacccgcataacttctttatcttccctcgc
aaggagcttccagatgacatttcatctcacgaatttctctgtcagaccacttcaattgac
ttcttagcaaaataccagtttgatttcaacacgtgcttccatgaaggaatatcttattta
tccagagcacaagaagaagaggctcttcagaaattaaatgtgttgtatcatgatggaata
gcatctccaaacacgtctgaagaggaagatgtgccattaaggagtactgctgatcttctt
ttcacagagagaatgaaaatcaaattcaaggaatggcgtgatgtgataatcagcaaccca
agaatggataaccattggctagaatgcaataaattcagcacacaccaatttcagacagtt
ttcttcaaaatgcacccagctattttactcaatggattcacatcgcatcagttaaagtta
attcaacaggttttaagaaaagattttaaagacctcatgtatatttcaacatttggtgag
gataacacgtccgaaaaaagagtagtttatacagatgatagtaacgacagtgtatcattg
atgaaagatttacaggaagatttactcagaagtagagaagcaagagtcaaatcagcagta
ggaatacgccatgtcattgatcttcttgcctcagaaaggaaattgattgttggtcatagt
tgtttcttagacattgcacaagtctacagcaaatttattggtcctcttccatcaaccgtg
aaggagtttgccttgggtatccacaaaattttgccgtacattgcagatactaggcatctt
atgtctgccagcgactcggttcaatatctgatgaggcagaaaagcaaatctctgtcctca
gttttctcattgttgtgccctgcatttcattcaactgttgcagagccatctaccctttct
cctgtgagaattgaagttgaggcagatgaaacaatgttatcttgctttgcttcaggtgct
aagcatgaagcagggtatgatgctttcatgactggatgtgttttcgcgcagctgtgtgat
catcttgatgtcaaatttgagcacctcccacctagggacaacttagcgatgaataataag
ctgcagaaatacatcaatcttctgtccccaagctttaacagtggaacatcacttgattta
agtactggcatggagagaccagatacaggttataagcgtagatatcctactgttttgtat
gataatgttgttctcatctggggataccagtctgagctaagaccaagggatataaaggat
tgcatctgcaaagtgtttggtccagcttcagtcacgacaatcttctcgattgattccact
gctgtccttgttcagttcagtaaacaagagtctgtaaacgatttcatggatctgaaggct
gcgttggagaaaacagatagtgctatatcagtcttgcaccctctgtcaactatattggaa
ggaggcaaaacacgagctgcaaactatgacacctacagagacatttgtggctcatctgta
tcgaagtatttctttgcagaccaagctgaagctgtctgttcaagttcaaagagtctgctc
aaatgtgagaacatagatgctgctgatacacccggagtaatactaaacgagagtatcctt
gatgaaactatacctacctcagaaaagcatgcaggcggaacaaagaatgtttccaagaag
gaagatgatagtgaaatttcatgccaagatatcttagatgcactacaagatggcaaagca
ttattcgacaaacgaacaagaagcacgtga |
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