Brachypodium distachyon (stiff brome): 100828438
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Entry
100828438 CDS
T01717
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100828438
09122 Translation
03013 Nucleocytoplasmic transport
100828438
03015 mRNA surveillance pathway
100828438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100828438
03041 Spliceosome [BR:
bdi03041
]
100828438
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100828438
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100828438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
100828438
NCBI-ProteinID:
XP_003559928
UniProt:
A0A2K2DKA2
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Position
1:16628186..16635312
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AA seq
952 aa
AA seq
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MLTYPVLNERSIDQWSIMELKDELCRRNLPIIGLKDDLVKRLFEDLQGNILGGEGTGGGA
TADDDLKEDSTSGSADTTIGLATMEQSVDEVPSQVATQEGDLVVSFTEDSKERAVATTDV
NEEAVVTTDEISQTTLVAAAEVVVAPLVDVATTDKVSLCDTVATKRDDLGSTPSHGTIVK
EVYAQADGHSAITAEKASEEGTSKKIIADDLPSDVASIDVKLDATSALGKLDADILEHKA
LSSPLDAIAPTVPCGVDAVATAPRENAVTLIPINSGDLKDEKTPSSSGASICQAVMDHIV
DEGHSQEGDHVVSVTEASKESAVATTDVNHEVSVTTGEVSRVTLVAAIEVTDAPLVDVAI
TKISLSDAVATKGDDLGSTPSDGTIVKEVYPQADGHSEIIAEKYPEKGTRKKMSVDDLPS
DAANIDVVYAASVKDKLSSDVLEHKAVSSRPETIAPHATAPGQNADTFILKIDSGDNASM
NDNQHDSGHTIITCQPTLSRPEDQVSEASSDLGSQIKCVLISHDNISTNVMGNLNADSSD
LELEAKRDMVKPPSNIPSVGDHLQAFNHDKEFSKNDISFQQVQSTTSMNLDKKEISHNGG
SPENLDLDRSSGDEMMEDVMESKHVDPNIKSGDLGGKNEFTNSDYEVKEVILIDTVTNDS
SVHTKAIAAEGKAVTPSEKRKPEAQEFLANKPIKRQRHVYNLKIPKQQACGPSGSDAPKD
VFQPALKHSFGRSDSTESGEAHKVHIVQPSLRPATTSLRVDRFVRPFTLKAVQELLGRTG
SVCGFWMDHIKTHCYVTYSSVEEAVATRNAVYNLQWPPNNGNYLVAEFVDPCEVKLRLEH
PPPPPVPIRLSTDTVPKAAPFHQAKANQMMAASRGLLPTPQSPMMLPPTSTPGSGREMLP
PPPKEPVSDTAPLSLDELFKRTQASPRIFYLPLSEEEMSAKLAARSKGKRGG
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgttgacataccctgtgctgaatgagaggtcaattgatcagtggagcatcatggaactg
aaggatgaactctgtaggaggaacctacctatcataggtttgaaagatgatcttgtgaaa
aggctctttgaggaccttcagggtaatattcttggtggagaaggaacaggtggcggagct
accgctgatgatgatctgaaagaggacagtacttctggttctgctgatacaactattggc
ctagctacgatggaacagagtgtcgatgaagttccttctcaggttgcaactcaggaaggg
gatcttgttgtttcttttacagaagatagtaaggaaagagcagttgcaactacagatgtt
aatgaggaagctgttgttactaccgatgaaattagtcagacaacgcttgttgctgctgca
gaagttgtcgttgcccctctagttgatgtggcaacaacagataaagtttctctatgtgac
actgtggcaactaaacgagatgaccttggatcaactccaagtcacggtactatagtgaag
gaagtatatgcacaagctgatggtcatagcgcgattactgcagagaaggcttcagaggaa
ggcaccagcaagaaaatcatcgctgatgatctaccatctgatgttgccagtattgatgtc
aagttggatgcaacttctgctttaggcaagttagacgcagacattctagagcacaaagca
ttatcatcacctctagatgctattgcgccaactgttccttgtggtgttgatgctgttgca
actgcaccaagagagaatgccgtgaccctgattcctataaattcgggtgatctgaaagat
gagaaaactcctagttcttctggtgcatctatttgccaagctgtgatggatcatattgtc
gatgaaggtcattctcaggaaggagatcatgttgtctctgttacagaagctagcaaggaa
agtgcagttgctactacagatgttaatcacgaagtttctgtaactaccggagaagttagt
cgagtaactcttgttgccgctatagaagttaccgatgcccctctagttgatgtggcaata
actaaaatttctctaagtgatgcagttgcaactaaaggcgatgatctaggatcaactccc
agtgacggtactatagtgaaggaagtatatccacaagccgatggtcatagtgagattatt
gcagagaagtatccagaaaaaggcaccaggaagaaaatgtctgttgatgatctaccatct
gatgctgccaatattgatgtggtgtatgcagcttctgttaaagacaagttaagctctgac
gttctagagcacaaagcagtatcatcacgtccagaaactattgcaccacatgcaactgca
ccaggacagaatgccgatacctttattctgaagatagattcaggtgacaatgcttcgatg
aacgataaccaacatgattctgggcacacgatcatcacctgccaaccaaccttgtctaga
ccagaagaccaggtatctgaggccagctcagatctaggttctcaaattaagtgtgtgttg
atttcccatgataatatatcaactaatgtaatgggtaacctgaatgctgacagttctgat
ttagaactagaggctaagcgggatatggtcaaaccaccatccaacattccctcagtaggt
gatcatttgcaggcattcaaccatgacaaagagttctctaagaatgatatatcattccaa
caagtacaatctacaaccagtatgaacttggacaagaaagagatcagtcacaatggtggt
tctcctgaaaatctagatttagacaggagctcaggtgatgaaatgatggaggatgtcatg
gaaagtaaacacgttgatccaaatatcaaatctggtgatcttggaggaaagaatgagttt
accaactcagactatgaggtaaaagaggttattctcattgatactgttaccaatgattca
tctgtgcatacaaaggccattgcagctgaagggaaagcagtaactccatctgaaaagagg
aaacctgaagcccaagaatttcttgcaaataagcccatcaaacgtcagcgccatgtgtat
aatctcaaaattcctaagcaacaagcatgcggaccaagtggctctgatgctcccaaggat
gtgtttcagcctgctctaaaacattcttttggcaggtctgattcaacagaaagtggagaa
gcccacaaagtgcacattgtgcaaccttctctgagacccgcaacaacttccttgagagtt
gatcgattcgttcgcccgtttactttgaaggctgttcaagagcttcttggtagaactgga
tctgtttgcggcttttggatggatcatatcaagacccactgctatgttacatactcttca
gtggaagaagctgtggcaaccaggaatgctgtttacaacctccagtggcccccaaacaac
ggtaattacttagttgcagaatttgttgacccatgtgaggtgaagctcagacttgaacac
cctcctccaccgccagtgcctatcaggctcagcacagatacagtaccaaaggcagcaccc
ttccatcaagccaaggctaaccaaatgatggctgcctcacgggggctattacctactccg
caatctcctatgatgctgcctcctacttctactccagggtcgggaagggagatgcttcca
ccccctccaaaggaacctgttagtgatacagctcccttgtcactcgatgaactcttcaag
aggacgcaggcctccccgaggattttctacttgcctttatcggaagaggagatgtcagcc
aagctggcagcgcgcagcaaaggaaagaggggagggtag
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