Brachypodium distachyon (stiff brome): 100828698
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Entry
100828698 CDS
T01717
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100828698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100828698
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100828698
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100828698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100828698
NCBI-ProteinID:
XP_003570299
UniProt:
I1IDG7
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Position
3:complement(54389351..54392495)
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AA seq
295 aa
AA seq
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MAMSDLAAAVISKPSGGGGEEEEEEEEEQVEIREVWADNLEAEFALIRDVVDEFPFVAMD
TEFPGIVCRPVGVFRSPADYNYATLKANVDMLHLIQLGLTFSGPTGELPALGAGRRRCVW
QFNFREFDDARDIFATDSIELLRHSGINFRLNAERGVDARRFAELLMSSGVVLNDAVYWV
TFHAGYDFGYLLKILTCNSLPDTQAGFFKLMKIYFPTVYDIKHLMKFCNSLHGGLNKLAE
LLDVERVGESHQAGSDSLVTSCAFWKLKDSFFAGSTEKYAGVLYGLNAENGVSAH
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtcggatctcgcggccgcggtgatctccaagcccagcggcggcggtggcgag
gaggaggaggaggaggaggaggagcaggtggagatccgggaggtgtgggcggacaacctg
gaggcggagttcgcgctgatccgcgacgtcgtcgacgagttccccttcgtcgccatggac
accgagttcccgggcatcgtgtgccgccccgtgggggtcttccgctccccggctgactac
aactacgccaccctcaaggccaacgtcgacatgctgcacctcatccagctagggctcacc
ttctcggggcccaccggcgagctgccggccctcggagccggccgccgccgctgcgtctgg
cagttcaacttccgcgagttcgacgacgcgcgcgacatcttcgccaccgactccatcgag
ctgctccgccacagcggcatcaatttccgcctcaacgctgagcgcggtgtcgacgctcgc
cggttcgccgagctcctcatgtcctccggcgtcgtgctcaatgacgccgtctactgggtc
accttccatgccggttacgactttggctacctgctcaagatcctcacctgcaacagccta
ccagatacgcaagccgggttctttaagctgatgaagatatatttccccactgtctatgac
atcaagcatctcatgaaattctgcaacagcctgcatggtgggctgaacaaacttgcagag
ctgcttgatgtggagcgtgttggagagtcccaccaggcagggtctgatagcctggtcaca
tcttgtgcattctggaagctcaaggattcgttctttgctggatcaacagagaaatatgca
ggcgtgctgtatgggctcaacgcagagaatggtgtcagtgcacattga
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