Brachypodium distachyon (stiff brome): 100828741
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Entry
100828741 CDS
T01717
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100828741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100828741
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
100828741
Prokaryotic type
Archaeal type
TFB
100828741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
Zn_ribbon_3
RB_B
DUF7573
Motif
Other DBs
NCBI-GeneID:
100828741
NCBI-ProteinID:
XP_003578512
UniProt:
I1IS80
LinkDB
All DBs
Position
4:41461659..41465118
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AA seq
312 aa
AA seq
DB search
MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG
GPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG
LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEEL
DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY
AKEEDLKNLCTP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacgttctgcccggactgcaagaagcacacggaggtggcgttcgaccactcg
gcgggggacacggtgtgcaccgagtgcggcctcgtcctggaggcgcactccgtggacgag
acctccgagtggcggaccttcgccaacgagtccaacgacaacgaccccgtccgtgtcggc
gggccctccaacccgctcctcaccgacgggggcctctccaccgtcatcgccaagcccaac
ggcgcgcacggcgagttcctctcctcctccctcggccgctggcagaaccgtggatccaac
cccgaccgctccctcatcctcgccttccgcaccatcgctaacatggccgacaggttgggt
cttgtggctactattaaggaccgagccaatgaaatctacaagaaggtggaagatctcaag
tctatcaggggcagaaatcaagatgccatattagctgcttgtctgtatattgcttgtagg
caagaagatcgtcctaggactgtaaaagaaatatgttcggttgccaatggagcaacaaag
aaagagattggtcgagcaaaagaattcatagtgaagcaattggaagttgagatgggtcaa
tctatggagatgggaacaatccacgccggagatttcctgaggcgtttctgttcaactctt
gggatgaacaatacagctgttaaagcagctcaggaggcagttcagcgctcagaggagctt
gatataaggaggagtccaatttcaattgcggctgctgtcatttatatgataacccagctc
tcagaggacaagaaaccacttaaagatatttccttggccactggtgtggcagaaggcacc
atcaggaattcatacaaggatctgtatccctacgcctcgaggctcatcccaaacacctac
gccaaggaggaagacctgaagaatctctgcacaccgtag
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