Brachypodium distachyon (stiff brome): 100829057
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Entry
100829057 CDS
T01717
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100829057
09123 Folding, sorting and degradation
03018 RNA degradation
100829057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100829057
03041 Spliceosome [BR:
bdi03041
]
100829057
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100829057
mRNA cycle factors
Stress granule specific factors
100829057
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Complex C specific factors
100829057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_Nup35
BRAP2
RRM_2
RRM_8
Motif
Other DBs
NCBI-GeneID:
100829057
NCBI-ProteinID:
XP_003580095
UniProt:
I1IZE7
LinkDB
All DBs
Position
5:complement(18542621..18549293)
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AA seq
661 aa
AA seq
DB search
MAAQVAVAVANGGSAAAVSPAAPGAVSVGVAQPLPTTSLYVGDLEASVTDSQLYELFSQA
GQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEMLNFVPLNNKPIRVMYSNRDPSSR
RSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQS
AMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYG
NITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMD
LKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKG
SGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRKEERKAMLQAQFSQMRPVPITPSM
TPRLPMYPPMAPLGQQLFYGQAPPPMMPPQPGFGFQQQLVPGMRPSGAHMPNYFVPVVQQ
GQQGPRPGMRRSGAGSVQGQQSAQSYQQQMVPRGRVYRYPPGPGRNMPEVQPMAGVGAGG
MIQPYDMGGFPVRDAGLSPAAPIGTLTSALANATPDQQRTLLGESLYPLVELLEHNQAAK
VTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQNPNAPTSQLAGLSMTDSII
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcaagtggcggtggcggtggcgaacgggggctcggcagcggctgtttccccg
gccgcgccaggagcggtcagcgtcggcgtggcgcagccgcttccgacgacgtcgctgtac
gtgggcgacctggaggcgtcggtcacggactcgcagctgtacgagctcttcagccaggcg
gggcaggtggtgtcggtccgcgtctgcagggacgtcaactcgcggcgctcgctaggctac
gcctacgtcaacttcagcaaccccatggatgctgcaagagcactggaaatgctgaacttt
gttcctctgaacaacaagcccattagggtgatgtattcaaaccgtgacccaagcagccgc
agaagtgggtctgcgaatatttttatcaagaaccttgacaagacaatagacaacaagact
cttcatgacaccttttctgcatttggtgctattctctcgtgtaaggtggccacagatgat
atgggccaatccaaaggctttggatttgttcagtatgaaaaagaagagtttgcacagtct
gcaatgaaaagcctaaatgggatgcttatcaacgataagcctgtctatgttggacctttc
ctacgcaagcaagagagagacaattctttcgacaaggcaagatttaacaatgtctttgtg
aaaaatttgtctgagtctaccacaaaagaggatctagtaaaaatattcagtgaatatgga
aacattacaagtgctgttgtcatggttggcacggatggtaaatcaaggtgctttggtttc
atcaattttgagagtcctgatgatgctgttcgtgctgttgaagaacttaatgggaagaaa
attaatgacaaagagtggtattgtgggagagctcagaagaaatctgagagagaaatggac
ttgaagagaagatttgagcaaagcatgaaagatgcagctgataaatatcaaggacagaat
ttgtacttgaagaatctggatgatggcatttcagatgaccagctacgcgaactattctca
acctttggcaaaattacctcatgcaaggtaatgcgtgatcaaaatggtgttagcaagggg
tctggctttgttgcgttttctacccgtgaggaagcatctcaggctataactgaaatgaat
ggaaaaatgctatctggaaagccactgtatgtcgcatttgcacagcgtaaagaagaaaga
aaagcgatgttacaggctcaattctctcagatgcgccctgtaccaataacaccttccatg
actcctcgacttcccatgtaccctcccatggctcctcttgggcagcaacttttctatggg
caagccccgcctcctatgatgccccctcagccgggattcggtttccagcaacagcttgtt
ccaggcatgaggcccagcggtgcccatatgccaaattactttgttccagttgtccaacaa
ggtcaacagggtccgcgtcctggcatgaggcgctctggtgctggatctgtccagggacag
caatctgctcagtcatatcagcaacagatggttccaagaggacgtgtctaccgataccca
cctggacctggacgtaacatgcctgaggtacaaccgatggcaggggttggtgctggaggt
atgattcagccatatgatatgggaggcttccctgtgcgagatgctggcttgtcacctgct
gctccaattggaactttaacttcggcccttgcaaatgctactccagaccaacaaagaacg
ctacttggtgaaagcctctatccactggttgagctactggagcacaatcaagctgccaag
gtcactggcatgcttctggagatggaccagacggaggttctgcatctgcttgagtctcca
gaagctctgaagtcaaaggtggctgaggcgatggatgttctccgcaatgtggcgcagcag
cagaatccgaatgccccgaccagccaacttgccggcctatctatgaccgacagcatcatc
tcctaa
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