KEGG   Brachypodium distachyon (stiff brome): 100829070
Entry
100829070         CDS       T01717                                 
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
bdi  Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:bdi01009]
    100829070
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bdi03036]
    100829070
Enzymes [BR:bdi01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     100829070
Protein phosphatases and associated proteins [BR:bdi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100829070
Chromosome and associated proteins [BR:bdi03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100829070
SSDB
Motif
Pfam: JmjC PLU-1 PHD JmjN zf-C5HC2 ARID zf-RING_2 KDM5_C-hel PHD-1st_NSD PHDvar_NSD DUF678 zf-HC5HC2H zf-RING_11
Other DBs
NCBI-GeneID: 100829070
NCBI-ProteinID: XP_010239211
UniProt: I1GV01
LinkDB
Position
1:complement(24807962..24823160)
AA seq 1885 aa
MGKGRPLPPATTTTSPSGSSGGGGFVPEAPVFRPTEEEFADPLAYVARIRPLAEPYGICR
IVPPPSWSPPKALDVSALSFPTKRQPIHRLLARSAPADPDTFLLDYTRFLKAAACGPPRR
GRKKGLSKSPALSDGRPLDLCRLFHAVKRFGGYDGTCEGKRWDDVVRLVDDKAPRHVPEC
AKHVLAQLYYEHLYDYEKFTNRQDDKKVKQAELGDQPSVSGSQDEGRNQSVSAETIDADV
SGVRSRKRRNPIHKKAFGMARSERQGNSIGKNAASSGARKRKRRKLDAEVNQVDQVCEQC
NSGLHGDAMLLCDRCDKGWHLYCLSPPLDTVPPGNWYCSDCMNSDRDCFGFVQRRKTCLL
DTFQRFDERVRRRWFGQRNPSRVQVEKQFWEIVEGKAGELEVMYGSDMDTSLYGSGFPRL
GDLVPPSVDPELWQKYCKSPWNLNNFPNLPGSVLRTVQDKIAGVMVPWLYIGMLFSSFCW
HVEDHCFYSINYLHWGEPKCWYGVPGAEANAFEQVMRNALPDLFDAQPDLLFHLVTMLNP
SVLRANGVPVYSVMQEPGNFVITFPRSFHGGFNLGLNCAEAVNFAPADWLPHGGIGAELY
RMYRKAPVLSHEELLYVVAKNGVENESLPYLKGEVERLFVKEKKCRGELWINGIVKSSLM
PPRSNPNFIGSEEDPMCIICRQYLYLSAVSCNCRPSSYVCLEHWKHLCECSPEKHRLLYR
HTLAELGDLACEVKASLSGENIKQSLFLLNTGPVPSKQVKDQYISYAQLAEDWLSKADHI
LHMPFLDTAYSTALEAAEQFLWGDHDMDSVRNMTLKLTEAKNWALCVRNCLSRIDECLLS
KEKSSEKVNYVEIEELVAVRCKPSCEPSLAQLQAYAEKGKMMISEINIALSSLSTVERLE
TLYSRASEFPVELTETSTLSYEISFSKSWLKKARAFLEQNKQGLIDSDFLNTLKIEMVQL
RVLVPEIDLVSKLWNEAESLRMRCQSFLQYSPVLKELESFLLAYDGTKFSIPELNLLKQH
HSDASSWASHVNNILGKLFERNDYHNVVEELTGILKDGKSLRVKVDELPIVEKELRKSFC
RKQASEALATHTSLEFVKEILIQASILTIEEEQLFVDLSKLLKNATAWEEKSRRMLEKSA
SLSEFEDHIRCSEDIKAILLSERDMKAEVIAAKLWMDKCQAYLRPRCDKLGYGVFLKVDD
LKDLICQPGNMKVILDTSALNSVLSDVEEWERNSLTLLSNLRTLLHFNVIGSTVDPLERN
LEELRNKVSGEIESGLSLGFELKLLNELKDFLLALEWMLRALSFCCGIPLLEDVDRAIEE
AVHLPAPLSNCPLVTLLMSGLSWLRKALVLLRNSGKSVKPKLEKVENILAEHQEIAVPYS
MMTTKLEDAINKHKSWTQQCNAFFTLPDHQSWAGLVRLRDSGQSVAFDCCEMDMVVLGIK
KIDGWFNKCRSTLYPDGNVNGSSRSMLLQISRSLDNASLLYAEDWKKNGFCVICSYDMGG
DVTSTCIICQHQYHSSCVEPLLASKRTSREYICPFCFSLESGDLLEKGIREQMSKGNRPA
LSALAELRSFTKGFYAGIEELDLLGEIVKKGCDFKSHLMQILHDADSYDGKDLRVMCKPL
LVALKATTAAGLYDQEVNRNIELVLRRYSWKKQIHKISCGGMKISIQHVMRLDKEGSNLE
ISGEDFFKLEICKIKEASQQWLAKAEKVAFDCGELPLDLVYELIMEGKKLSVHVEKELKL
LRDRSILYCICRKPYDNRAMIACDQCDEWYHFDCINLCGPPPETFYCPACCPNNGDGFIL
LPRSASEEDRSSTEAGPHTPPASCDESEILEGNKRRSNPRVKSQIKVDLVRLLRCDSDID
NTWRDSKRVLQQRTARRRSDFVGLV
NT seq 5658 nt   +upstreamnt  +downstreamnt
atgggcaaaggccggcccctcccgcccgccaccaccaccacctctccctccggctccagc
ggcggcggaggcttcgtacccgaagcgccggtgttccgccccacggaggaggaattcgcc
gatccgctcgcctacgtcgctcgcattcgcccgctcgccgagccctacggcatctgccgc
atcgtgcctccgccgtcctggtcgccgcccaaggccctcgatgtctccgcgctctccttc
cccaccaagaggcagcccatccaccgcctcctcgcccgctccgcccccgctgacccggat
accttcctcctcgactacacccgcttcctcaaggccgccgcctgcggaccgccacggcga
ggccgcaagaagggcctgtccaagtcgcctgctctctccgacggccgccctctggacctc
tgccgcctgttccatgccgtcaagcgcttcggcggctacgatggcacctgcgaggggaag
cgatgggacgacgtcgtccgcctcgttgatgacaaggcgccgaggcatgtgcctgagtgt
gccaagcacgtgctggctcagctgtactacgagcatctctacgactacgagaagttcaca
aacagacaggatgacaagaaggtgaagcaggcggaactcggagatcaaccatcggtttct
ggttcacaggatgaagggaggaaccaatctgtttctgcagaaacgattgatgcagacgtt
tctggtgttaggagccggaagaggaggaatcccatacacaagaaagccttcggaatggct
cgtagtgagcgtcaaggtaacagtatcgggaagaatgcagcgtcttcgggagctcggaag
cgtaaaaggagaaagctcgacgcagaggttaaccaagtggaccaggtctgtgagcagtgt
aatagcgggttgcatggtgacgccatgctgctatgtgatcgctgcgataaagggtggcat
ttgtattgcttatcacctccgctcgacactgtgcctccagggaactggtattgctcagac
tgcatgaactctgatagggattgttttggatttgtccaaaggaggaagacctgcttgctt
gatactttccagcgatttgatgagagggtgagaaggagatggtttgggcaaaggaatcct
agccgtgttcaggtcgagaagcagttttgggagattgtggagggtaaggcaggggagctg
gaggttatgtatgggagtgacatggacacttcactttatggaagtggatttcctcgtctt
ggtgatctggtgccgccatcagtggatccagagttatggcagaagtactgcaagagccca
tggaatctcaacaattttccaaacctgccaggctcagttcttcgaactgtgcaggataaa
attgctggtgtaatggtcccttggctctacatagggatgttattttcgtcattttgttgg
catgttgaggaccattgtttttattcaattaattatttacattggggagagccaaaatgt
tggtatggggtacctggggcagaagcaaatgcttttgagcaggttatgcgcaatgcttta
cctgatctatttgatgcacaacctgacctactttttcacctcgtcactatgctgaatcca
tcggttttacgagcaaatggtgttcctgtttatagtgtgatgcaggaacctggcaacttc
gtgattacttttcccagatcattccatggtggtttcaatttaggtttaaactgtgccgag
gctgttaattttgctcctgctgattggctacctcatggtggaattggagctgaactatat
cgtatgtaccgtaaggcacctgttttgtcccatgaagagcttttgtatgtcgtcgcgaag
aatggtgtggagaatgaatctcttccgtacttaaaaggagaagtagagaggctatttgtg
aaagagaaaaaatgccgaggggagctatggattaatgggattgtcaaatccagtttaatg
ccgccaaggagtaaccccaactttattggaagtgaagaggatcctatgtgcattatatgc
cgacagtacctgtatctttcagcggtttcctgtaactgtaggccttcttcttacgtttgc
cttgagcactggaagcacctttgtgaatgcagtccagagaagcatcgcttactttaccgc
cacacccttgcagagttgggtgatttagcttgcgaggtcaaggctagtctctctggggag
aatattaagcagagcctcttcttgcttaatactggtcccgtgccatctaaacaggtcaaa
gatcagtatatatcatatgcacaacttgctgaggattggctttcaaaagctgatcatatt
ctccatatgccttttctggatactgcatattccactgccttagaagctgctgaacaattt
ctgtggggtgaccatgacatggattctgtccggaatatgacacttaaattaactgaggct
aagaactgggctctgtgtgttagaaattgcctttccagaattgatgaatgtttgctctct
aaggagaagtcttcagagaaagtaaattacgtggaaatcgaagaattagttgctgtaaga
tgtaaaccatcctgtgagcctagtcttgcgcagctgcaggcctatgccgagaaaggaaaa
atgatgataagtgaaataaacattgcattatcatccctctcaacggttgagcgcttggaa
acgctgtattctcgagcttcagaattccctgttgagctaacagaaacatcaacattgtct
tatgagatttctttttcgaagtcttggttgaagaaagcacgtgctttccttgaacagaat
aaacagggcctcattgactcagatttcctgaatactctgaaaatagagatggtacaactt
cgagttctagttccagaaattgatcttgtttcaaagctgtggaatgaagctgaatcattg
agaatgcggtgtcaatcattcctccaatactcccctgttctaaaggagctggagagtttc
ctccttgcgtacgatggtacaaagtttagcattccagagctgaaccttcttaagcaacat
cattcagatgcttcctcctgggcgagtcatgtcaataacatactcggaaaactttttgaa
aggaatgactatcacaacgttgttgaggagttaacaggcattctgaaggatgggaaatca
ctgagggtaaaagttgacgaactaccaattgttgagaaagaactgaggaaatccttttgc
aggaagcaagcatccgaggctcttgcaacacatacttcgctggaatttgttaaagaaatt
ctaatacaagcctccatattaactattgaagaggaacaactatttgttgatctgtccaag
ctgctaaaaaatgccaccgcttgggaagagaagtctcgacgtatgctggagaaatcagct
tctctctctgagtttgaagatcatatacggtgctcagaggacataaaagctatacttctg
tctgagcgtgatatgaaagcagaggttattgctgctaagttgtggatggacaaatgtcag
gcctatctgagacctagatgtgataaacttggatatggtgtttttcttaaagttgatgac
ttgaaggatttaatctgtcagcctggaaatatgaaagtcattctcgacacttcagcactt
aattctgttctcagtgatgtcgaagagtgggaacgtaattcgctaactctgttgagcaat
ttaagaaccctactgcattttaatgtgattggctctacagttgacccacttgaaagaaac
ttggaggagctgcgaaataaagtcagtggggaaatagaaagtggactatctctaggtttt
gagttaaagcttctaaatgaactgaaagattttttgctggctcttgaatggatgttgaga
gcactgtctttctgctgcgggattcccttgttagaggatgttgatagagcaattgaagaa
gctgtccacctgcctgcccctttgtcaaactgccctttagttacattgttgatgagtgga
ttatcttggctaagaaaagctcttgttttgcttcgtaattctgggaagtctgtaaaacct
aaattggaaaaggttgaaaacattttagcagaacatcaggaaattgctgtaccttattct
atgatgactaccaagcttgaggatgctataaacaaacataagtcatggacacagcaatgt
aatgccttctttacgttacctgatcaccaatcttgggctggactagtaaggcttagagac
agtggccagtctgttgcatttgattgttgtgaaatggatatggttgttcttggtattaaa
aagatcgatgggtggttcaataaatgccgctctactctgtatcctgatggcaatgtcaat
ggttcatcgcgctccatgcttttacagatcagcagatcactggacaatgcttctttgtta
tatgctgaggattggaagaagaatgggttctgtgtcatctgttcatatgatatgggaggt
gatgtaacctctacatgtataatatgtcaacaccaataccacagctcttgtgtggaacca
ctgcttgcttctaaacgaacgtctcgtgaatatatttgcccattttgcttctctttagaa
agcggggatcttttagaaaaaggaatacgagaacagatgtctaaagggaaccgtcctgct
cttagtgcacttgctgaactccgcagtttcacaaagggtttctacgcaggaatcgaggag
ttggatttgttgggagagattgtcaagaagggttgtgattttaagtcccatctgatgcaa
attttgcatgatgctgattcttacgacggaaaagatcttagggtcatgtgcaagcctctt
ctggttgctctaaaggcaacaacagctgctggcttatatgatcaggaagtgaaccgcaac
attgagttggtattgagaagatattcgtggaagaaacagattcataaaatctcgtgtggt
ggaatgaagatatcaatccaacatgtcatgcgccttgataaagagggttctaatttagag
atatctggtgaagatttcttcaaattggagatatgtaaaataaaggaagccagtcagcag
tggctggccaaagcagaaaaggttgcgtttgattgtggtgagcttccacttgatcttgta
tatgagcttattatggaagggaaaaaactatctgtgcatgtcgagaaggaactaaagtta
ctcagagaccggagcattctttattgcatttgccgtaagccatatgataacagggccatg
atcgcatgcgatcagtgtgatgagtggtaccattttgattgcatcaatttgtgtggaccc
cctccagaaacattctattgtcctgcttgctgtcctaataacggtgatgggtttatactg
cttccacggtccgctagcgaggaagatagatcaagcaccgaagcaggacctcacactcct
ccagcatcttgtgacgaatcagagatattggagggtaataagcgtaggagtaacccacga
gtgaaatcccagattaaggtagatttagtaagactcctacgctgtgatagtgatatagat
aacacgtggagagatagcaaaagggttctccaacaaagaacagccagaagacgcagcgat
tttgtgggactggtatga

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