Brachypodium distachyon (stiff brome): 100829254
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Entry
100829254 CDS
T01717
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03410
Base excision repair
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100829254
03410 Base excision repair
100829254
03420 Nucleotide excision repair
100829254
03430 Mismatch repair
100829254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdi03032
]
100829254
03036 Chromosome and associated proteins [BR:
bdi03036
]
100829254
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100829254
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100829254
DNA Replication Termination Factors
ELG1-RFC complex
100829254
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100829254
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100829254
Check point factors
HRAD17(Rad24)-RFC complex
100829254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Mg_chelatase
Rad17
AAA_16
Viral_helicase1
RuvB_N
RCF1-5-like_lid
nSTAND3
AAA_11
AAA_assoc_2
AAA_19
AAA_25
AAA_28
AAA_5
AAA_30
DNAX_ATPase_lid
ABC_tran
AAA_24
RNA_helicase
IstB_IS21
AAA_3
MeaB
DUF6120
bpMoxR
AAA_18
NTPase_1
DO-GTPase1
Motif
Other DBs
NCBI-GeneID:
100829254
NCBI-ProteinID:
XP_003580347
UniProt:
I1J0Q5
LinkDB
All DBs
Position
5:21962655..21966409
Genome browser
AA seq
333 aa
AA seq
DB search
MAASSSAAAPTDTYDIPWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGT
GKTTSILALAHEMLGPSYREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVIL
DEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILG
RLMVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHP
LHVKNMVKNVLDGKFDEACSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLELLKET
GFAHMRICDGVGSFLQLSGLLAKFAIVRETAKA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcctcttccgccgccgcccccaccgacacatacgacatcccgtgggtggag
aagtaccgccccagccgcgtcgcagatgtcgtcggcaactccgacgccgtcagccgcctc
gaggtcatcgcccgcgacggcaacatgcccaacctcatcctatccgggcctccggggacc
ggaaagacgacgagcatcctggcactggcccacgagatgctcgggcccagctatcgcgag
ggcgtgcttgagctcaacgcctcggacgacagggggctggatgtggtccggaacaagatc
aagatgttcgcgcagaagaaggtcacactgccgccgggacggcacaaaatcgtcatactg
gacgaggctgacagcatgacaacaggggcacagcaagcactgagaagaaccatggagatt
tattcaaacaccacaagattcgctcttgcatgcaacacttcatctaaaatcattgaacct
attcaaagtcgctgtgctattgttcggttctcaaggctttcagatcaggagatccttggc
cgccttatggttgtggtggccgccgagaaggtcccttatgtgccagaaggtcttgaagcc
atcatttttactgctgatggtgatatgaggcaagctttgaacaatttgcaagctacagtt
agtgggtttcgttttgttaatcaagaaaatgtgttcaaggtatgcgatcaaccacatcct
ctgcatgtcaagaatatggtaaaaaatgtgcttgacggaaagtttgatgaagcctgctcc
ggtctaaagcaactatatgatttgggctactctcctactgatataatcaccactctcttc
cgtgttgtcaagaactatgacatggctgagtatctaaagctggaattgctgaaggagacc
ggatttgcccacatgagaatctgtgatggtgtcgggtcatttcttcagctttcaggcctt
ctggctaagtttgctattgtgagagaaacagccaaagcgtaa
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