KEGG   Brachypodium distachyon (stiff brome): 100829409
Entry
100829409         CDS       T01717                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03030  DNA replication
bdi03410  Base excision repair
bdi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100829409
   03410 Base excision repair
    100829409
   03420 Nucleotide excision repair
    100829409
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bdi03032]
    100829409
   03400 DNA repair and recombination proteins [BR:bdi03400]
    100829409
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     100829409
DNA replication proteins [BR:bdi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    100829409
DNA repair and recombination proteins [BR:bdi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      100829409
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 100829409
NCBI-ProteinID: XP_010235462
UniProt: A0A0Q3QCT5
LinkDB
Position
3:45643733..45664246
AA seq 2214 aa
MSGGDSRRRRPSAGGGGGGGGGGWGGRRSGSSAAKEQRLRLGAEELLESRLGFAPYTEGE
RRLGWLLTFSPSSWEDEDTGKIYSCVDLYFVSQDGSTFKVKYKFPPYFYAATKEKMELEV
EAYLRRRYEGEISDIEIIEKEDLDLKNHLSGLKRKYLKIQFDTVQQLMRVRNDLLHVVEK
NEEERDAVDAFESIYGVKRVERPQDYINCIIDLREYDVPYHVRFATDNDVRSGQWYNVGV
SGSDVLLQRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDSVMMISYMIDGQGYLIINR
ECVGEDIEDLEYTPKPEFEGYFRVKNVANEVDLLKAWFSHMQEVKPGIYVTYNGDFFDWP
FLEKRAAHHGIKMNEEIGFQCDDNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTK
AKLGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSP
DEVLRKGSGTLCEMLLMVQAFKANIICPNKHQADLEKFYNNRLVESETYIGGHVECLETG
VFRSDLPTKFQLEPSAYEQLIENLDRDLQYSISVEGKLDINSVTNYDEVKDAIKQKLISL
RDHPTREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDVDCTACDFNRPGKNCLRTLEWV
WRGETYMAKKSDYHHIKRQIESEMIQAGGTTSSKPFLDLSKPEHLLKLKDRLKKYCQKAY
RRVVDKPITEVREAGICMRENSFYVDTVRSFRDRRYEYKGLNKTWKGKLAEAKASGNSIK
IQEAQDMVVLFDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLV
DKIGRPLELDTDGIWCVLPGSFPENFTFKTTSGKKLTISYPCVMLNVDVARNNTNDQYQT
LKDPVNKLYTTNSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNEDGTLAELKGFE
IKRRGELKLIKVFQAEVFDKFLHGSTLEECYAAVASVANRWLDLLDNQGIDISDSELLGF
ISESSTMSKSLVDYGEQKSCAVTTAKRLAEFLGDSMVKDKGLHCQYIVAREPQGTPVSER
AVPVAIFETDDEIAKFYLRKWCKVSTEANIRFILDWSYYKQRLSSAIQKIITIPAAMQKI
SNPVPRVLHPDWLHKKVREKDDRFRQRKLHDMFSPLDKDRGMQNLNGTGDMEDFLTPNNG
LRKAAASHGFNIGKENRRNGPPSEEAGSHRSKNQQKSVTRSNEPLRDDSADERVDRSTDY
QGWLDARKRKWKNVREQKKRRRLGSAASSEGPTNGLFSARNVSQLRGNGRNRSTFFQKQE
LSLFRSHWQIIQLAPSTLPGRFFAWVVADGIMFKIPINVPRVFYLNSKAPVTEEFPGRRV
KKILPHGRPCFNLIEVVTSEEQFRAEGKKLAAHLAEPDVEGIYETKIPLELNAVLQIGCV
CKVDKSAKKRSIQDGWDLAELQMKTTAECSYLEQTVSFFYLYHSLSEGRAVYVMYFPTSF
RIHAVVVNPFRNKELSPAFLEKQFRDACQASGPLHENLTFHVDYHTSIDTGSKYVERTLL
EYRQQHPGPVICIIECPKLRVIREAVRALDDFPCVTIPCNARDNNYQALGWQATAGRTSM
QRCAASTQWFNERIALARYAHVPLGNFELDWLLFTADVFFSRALHDQQQVLWISDDGIPD
LGGTYEGDTCFADEVIQPSLTYPGAYRRVAVELKIHHLAVNSLLKSSQVDEMEGGSIGSF
ENDIPPGLHATETDCNDASLCLPAFQVLKQLIQRCISDAVSSGNVFADAILQHLYRWLCS
PRSKLHDPALHRLLHNVMKKVFALLVAEFRKLGANVIFANFSKIIIDTGKADLPSARAYC
DSLLKTLQTRDLFEWIELEPLHYWHSLLFMDQYNYGGIQAKTQNLTSEDESDGDNDIDIV
SSWNIAEYLPKATQDHFVLIVSEFLYIPWKYMKEEVAKRAATRDDTSCTPSITIMAAENL
EGQVIAYLRGQVSGYFASKLLTIVDDILHHFKGKGKSESVESASREPDPHTQKGDAALEF
IKHICAVLALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSYCNDC
RDLDLCRDSALQGHEWRCAVPQCGQPYHREQMENALLQVVRQRERLYHLQDLVCLRCRQV
KAAHVSEQCSCGGSFRCKEESSYFLSKMRVFLKVAVSQKFELLQDCVQWILEVR
NT seq 6645 nt   +upstreamnt  +downstreamnt
atgagtggcggtgatagtaggcgacggaggccgtcggccggaggaggtggaggtggaggc
ggcggtggctggggcgggcggaggtctggatcgtcggcggcgaaggagcagcggctgcgg
ctgggggcggaagagcttctcgagagccgtctcggcttcgctccctacaccgaaggagag
cgccggcttggctggctcctcaccttctccccctcatcgtgggaggatgaggacacaggg
aaaatctacagctgtgttgacctatacttcgtgtcccaggatggttctacatttaaagtg
aagtacaagttcccaccttatttttatgctgcaactaaggagaagatggagttggaagtt
gaggcgtatctccggcgacgttatgaaggggaaatttcggacatagaaataattgagaaa
gaggatcttgatcttaaaaaccacctttctggtttgaagagaaaatatttgaagattcag
tttgacactgtgcagcaattaatgcgtgtaaggaatgacctattgcatgttgtcgaaaag
aatgaagaagaacgagatgctgttgatgcatttgaatcaatttatggtgtaaaaagggta
gaaaggccacaggattacatcaattgcatcattgatttacgggaatatgatgtcccctat
catgttcgttttgccacagataatgatgtgagatctggacaatggtacaatgttggtgta
tctggttctgatgttttgcttcagagaagggaagatctgcttcagcgtgcagaagttcat
gtatgtgcatttgatattgagaccacaaagctgcccctgaagttcccagatgccgaatac
gacagtgtaatgatgatctcctacatgattgatgggcaagggtacttgataatcaaccga
gagtgtgtaggggaagatattgaagatctggagtacacacctaaaccagaatttgagggt
tacttcagagttaagaatgttgcaaacgaggtggatctacttaaagcttggttttctcac
atgcaagaggttaagcccggtatttatgttacatacaacggtgacttttttgactggcca
tttttggagaagagagctgctcaccatggaataaaaatgaatgaggagattggattccaa
tgtgacgataatcaaggggaatgtcgagctaaattctcttgtcatcttgattgctttgcc
tgggtgaagcgagatagttaccttccacagggaagccagggtctaaaggctgttacaaaa
gccaagcttggttatgatcctttggaggttaatccagaagatatggttcgctttgcaatg
gagcagccacagacaatggcttcttattctgtatcagatgctgttgcaacatattactta
tacatgacttatgtccatccatttatcttctcccttgcaaccataatacctatgtcacct
gatgaggtattgaggaaaggaagcgggacactatgtgaaatgctgctaatggtccaggca
ttcaaggctaatatcatttgtcctaacaagcaccaagctgacctggagaagttctacaat
aaccgtctcgtagaaagcgaaacatacattggtggtcatgttgagtgtcttgaaactggt
gtgtttagatctgatcttcctacaaagtttcagcttgaaccctcagcctatgagcaattg
attgaaaatcttgaccgtgatctgcaatattccatttccgtagaaggaaagttagatatc
aattctgtcacaaattatgatgaagtcaaggatgccataaagcaaaagcttatttcgttg
cgagaccacccaactcgtgaagaatgccctcttatatatcatctggatgttgctgcaatg
tatccaaatatcattttgacaaataggctccagccaccatccatagttacagatgtggac
tgcacagcatgcgatttcaatcgccctggaaagaattgccttagaacacttgaatgggtg
tggcgaggagagacttacatggcgaaaaagagtgactatcatcatatcaagaggcaaatt
gagtcagagatgattcaagctggtgggactacatcttcaaagccttttcttgacctctca
aaaccagaacatttactaaaacttaaggatcgtttaaagaagtactgccagaaggcgtat
aggagagtggttgacaagccaatcacagaagtgagagaagctggaatatgcatgcgtgaa
aattctttctatgtagatacagtgcgaagctttcgtgatagaaggtatgaatacaaaggc
ctgaacaaaacatggaaaggaaaactggcagaagcaaaagcaagtggaaattctatcaaa
attcaagaagcacaggacatggttgtgctatttgattctttgcagcttgctcacaagtgc
atattgaattctttttatggatatgttatgcgcaagggtgcaagatggtactctatggaa
atggctggtgttgtaacatatactggtgcgaagatcatccaaaatgctcgactacttgta
gacaaaattggaagaccactggaactggacactgatggcatttggtgtgttttgcctggt
tcttttccagagaactttacattcaagacaacatctgggaagaagctcacaatatcttat
ccttgtgttatgcttaatgttgatgttgcacgaaataacaccaatgatcaatatcagaca
ctgaaagatccagtaaataagctatatacaacaaacagtgaatgttccatcgaatttgag
gtggatggaccttacaaggctatgattctacctgcctctaaagaggaagggattctgata
aagaagaggtatgctgtcttcaatgaagatggcaccctggctgaactgaaaggttttgag
attaagcgtcgaggtgagctgaagctcatcaaagtgtttcaggcagaggtatttgataaa
tttctccacggttctactttagaagaatgttatgcagctgttgcctctgtagctaaccgt
tggttagacctactggataatcaaggaattgatatttctgatagtgagttgcttggcttc
atatcggagtcaagcacaatgagtaaatctcttgttgactatggagaacaaaagtcatgt
gctgtaacgacagcgaaaagacttgctgaattccttggagattcaatggttaaagacaaa
ggactacactgccaatatatagttgcccgggagccacaaggcacaccagtgagtgagcgt
gctgttccagtagctatttttgagacagatgatgaaattgcaaagttttatttaagaaaa
tggtgcaaagtttccactgaagcaaacatccgattcattcttgattggtcttactacaag
caacgcttaagctcagctattcagaagatcataactattcctgcagcaatgcaaaagata
tcaaatcctgtaccccgagttcttcatcctgattggttgcataaaaaggtcagagagaag
gatgatcgatttcgccagcggaaactacatgatatgtttagtcccttggataaagacagg
gggatgcagaacttgaatgggactggagacatggaagattttttaacaccaaacaatggt
ttaagaaaagctgctgcatcccatggttttaacattggcaaagaaaatcgtagaaatggg
ccaccatcagaagaagctggttcacatcgtagcaagaaccagcaaaaatctgtaaccagg
tcaaatgagccactccgagatgactctgctgatgaacgagttgacagaagtactgattat
caaggatggcttgatgcgaggaagagaaaatggaaaaatgtccgtgaacagaaaaaacgt
cgaaggttgggttctgctgcttcttctgagggtcccactaatggtttgttttctgcaaga
aacgtcagccagttacgtggcaatggtagaaatcgatctacatttttccagaaacaagaa
ttgtccctctttagatcccattggcagataatccagcttgctccaagtacattgcctggc
cgcttttttgcatgggttgttgctgacgggatcatgttcaagattcctatcaatgtgcct
agagttttttacctaaactctaaagctcctgtcacagaagagtttccaggaaggcgtgta
aagaagattcttcctcatggaagaccatgtttcaatctcattgaggttgtaactagtgaa
gaacagtttagagctgaagggaaaaaacttgctgctcatcttgcagagccagatgttgaa
ggaatatatgagacaaaaattccactggagcttaatgctgttctgcaaattggttgtgtc
tgcaaagtggacaagtctgcaaaaaaaagaagtatccaagacggatgggatcttgctgag
ttgcaaatgaaaacaacagcggagtgctcatacctggaacaaacagtttcatttttctat
ctataccacagcttgtctgaaggaagggctgtatatgtcatgtactttcctacatctttc
agaatacatgcagtggttgtcaatcctttccgcaacaaagaattatctccggcatttctt
gaaaaacaatttcgggatgcttgccaagcttctggacctttgcatgaaaatctcactttc
catgtggactaccacacatcaattgatacaggtagcaaatacgtggaaagaacgttactt
gagtacagacaacaacatcctggacctgtcatatgcatcatagaatgccctaaactcaga
gttataagggaagctgtacgggcacttgatgatttcccatgtgtaaccattccttgcaat
gcacgggacaacaactaccaggctcttggttggcaagctacagctggtagaacaagcatg
cagcgttgtgctgcatcaactcaatggttcaatgaaagaattgcactcgctagatatgca
catgtgccattgggaaactttgaacttgattggcttctttttactgccgatgtgttcttt
tcaagggcattgcatgatcaacagcaggtactctggatatctgatgatggcattcctgat
ttaggaggcacatatgaaggagatacatgttttgctgatgaagtcattcagccttcgcta
acttatcctggtgcatatagaagagttgccgttgagcttaagattcatcacttggcagta
aattctctccttaagagcagtcaagtggatgaaatggaaggaggatccatcggcagcttt
gaaaatgacattcctcctggtctacatgccactgaaactgactgtaatgacgctagctta
tgtctacctgctttccaagtgctgaagcaactcattcaaagatgcatctcagacgcagta
tcttctggaaatgtatttgctgatgcaattttgcaacatctctaccgttggctttgcagc
ccacggtcgaaacttcatgatccagctctccaccgtctccttcataatgtcatgaagaag
gtctttgctctattagtggctgaatttcgaaagcttggagctaatgttatctttgcaaac
ttttctaagataatcatagatactggaaaagcagacttgccgtcagcacgtgcatactgt
gatagcctgctgaaaaccttacagacaagggatctttttgagtggatagagctggaacct
ttgcactattggcattccttactgttcatggaccagtataactatggtgggattcaggct
aaaacacaaaatctaacatctgaggacgaatcagatggtgataatgatatcgacattgtg
tcaagctggaacatagcagaatacttacccaaagctacacaggatcactttgtcttgatc
gtatcggagttcctatatattccatggaaatacatgaaagaagaagtagctaaacgagca
gctacaagggatgatacttcatgcactccatctataacaatcatggccgctgagaatctt
gagggccaggtcatagcttacctccgtgggcaggtcagcggttactttgcaagcaagctt
cttacaattgtggatgatatacttcaccatttcaaaggaaaaggcaaatctgaatcagtt
gaatctgcaagtagagaacctgatcctcacacacaaaaaggcgatgctgcattggagttc
attaaacatatatgcgctgttcttgctctcgatcagaacgttcagcatgatattctgaga
atgaggaagaacttgttaaagttggtccgtgtgaaggaatttgctccagaagcacaattc
caagatccctgtgcctcgttcactctcccaaacgtgatctgcagctattgcaatgattgc
cgggatcttgatctctgccgtgattcagcactccaaggtcatgagtggaggtgcgcggta
ccgcaatgtggacagccgtaccaccgtgagcagatggaaaatgcacttctgcaggttgtc
cggcagcgggagaggctttaccacttgcaggatttagtgtgcctccgctgcaggcaagtg
aaagcagcccatgtatccgagcagtgctcctgtggaggctcattccggtgcaaggaagag
tcgtcatatttccttagcaagatgcgggttttcctaaaagttgcagtcagtcaaaagttc
gagctgcttcaggattgtgtccaatggattctggaagtcagataa

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