Brachypodium distachyon (stiff brome): 100829557
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Entry
100829557 CDS
T01717
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100829557
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
100829557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
HEAT_2
INTS1_R4
PHD
DUF6604
zf-RING_2
zf-HC5HC2H_2
zf-HC5HC2H
Chap-C
Motif
Other DBs
NCBI-GeneID:
100829557
NCBI-ProteinID:
XP_010228469
UniProt:
A0A0Q3HEA2
LinkDB
All DBs
Position
1:58641503..58654332
Genome browser
AA seq
1771 aa
AA seq
DB search
MDPPDAAGRAGFERACRLPNTVHSEIAAALPLPTLPPTLGVLGGDDRDEPLAEPDRPDMI
MHAADIARALANTDISYLGFTEADHVEADPSECSLLWREVLKHNPDAFNIKPRAPPPPAP
ASQGPLDDQEYHNRARDKHFEHLAPSLGKARKEHAFPPDEINSHREHLHNDLTPDAVASK
KPKMRKKDIDNSASSSGPSIPNSQGVITNFRELVEDFCGKAEIPDNADGDDWLSIPLNDV
KVLVNEITYVRSKEMLHVIPMDTLTSLLHVIDRQIRCSQGLSIDGKGNPDAEDTEHTVFS
ALESIHAALAIMTHRDMPKQLYREELIERIIDFSRHQIMDCMAASNPTFRALYKPAGNVA
NDGDEDEDDVENGQASKKRRTASNLSARKSSANKVSASIYSAVQKLCLILGFLKELLTTV
RLSDSCILQLAKTCFTTFLVDNMQLLQLKAIDVICTVFSSYTQHRTYVIDETLYLVRKLQ
FSKNAIRTYHLADDEQKQIQMITALLVHLVQFSANVPDSLKGTVNWSTIIDASVDSSYPI
NCHEAATEACCLFWTNVLQRFTAAKSQDMSEAKGIIENLVQDLLTVLNLPEYPAAAPILE
VLCVLLLQNAGLNSKDTSARCFAIDLLGGIASRLKRDSVICSKEKIWILQELIDADNDGS
KILKNKCCVCRGGRGINMACDSCGRCFHSDCMGTGSQENLQRDSVCPLCFCKQQLSVLQS
YYELQNKENGKRTSTSNKKKSATPEEVTAVDIVQQILLNYLQEAGPQDDGNLFSRWFYLC
MWYKEDLRSQEKIIYYLARLKSKEILRYSGNGLVLSRDWAKKICLALGQKNSFSRGFDKI
LALLLASLRENSPVIRAKALRAVSSIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALE
LVGRHIASHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNTDTTHAFVEIIS
RVNDEESSVQDLVCKTFYELWFDEPIGSHKHLVADGSSVPMEIAKKTEQIVDMLKKMPNH
QPLITIIKRSLTLDFLPQSSKASGINSSMMSSLRKRCELICKRLLERILQVEEGADNEAK
VHTLPYVLVLQAFCIVDPTLCTPVTDPSQFVVTLQPYLKNKVDSKSTAQLLESIIFVIDS
VLPLIRKPPQTVVEELEQDLKQMIVRHSFLTVVHACIKCLSALSNAASRGPKLFEHLVSI
FYKHLSGPNSDSQVLGRSLFCLGLLLRYGYKLMTASENQLDFPKILDLLKRRYLLKEDFS
LKVRALQALGYILIAKPEFMLQKDILNLIEASLSSDVDYRLKMQGLQNLCEYLRDAESQL
TAESTGKPAVQYAANGGSEVPVAAGAGDTNICGGIIQLYWNSILERCLDMNDQVRHAALK
IVEIVLRQGLVHPITCVPHLISLETDPVEANSKLSHHLLMNMNEKYPSFFESRLGDGLQM
SFRFFEAIVSNHNMAATNMKSNPIAFVKPGISRIYRLIRANRNSRNKFVHSIVRKFVSDG
RSYPTIGFLVYCAEVLASLPFTCPDEPLYLVYDINRVIQIRAGAIESNLKNWTSLDQQQD
MAGIPGYTGDVMHEPGGYSDQNVADICQRTLNNPCSTSGVDMGKLQGDCHEAIALQLLLK
LKRHLKIVYSLTDARCQAFSPKDAPKSAEAFSKQNIPLNINNTNTSLPSCLQDVARVYQD
FKTLLREDAMDYVMYTAATVQKKRPTPRSSSKVRKPVPVTRGRGGGGRGRGGGDDDGHDT
DDDEWSGGPRMLDFGAQAVTGGRVTRQRVQV
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atggaccctcccgacgccgccgggagggcgggcttcgagcgcgcctgccgcctgcccaac
accgtccactccgagatcgccgccgcgctgccgctccccaccctcccgcccacgctcggc
gtcctcggcggtgacgaccgcgacgagccgctcgccgagcccgaccgccccgacatgatc
atgcacgccgccgacatcgcgcgcgcgctcgccaacaccgacatctcctacctgggattc
acggaggcggaccacgtcgaggcggatcccagcgagtgctccttgctctggagggaggtg
ctcaagcacaacccggacgccttcaacatcaagccccgcgcaccacctcctcctgctcct
gcttcgcaaggcccccttgatgatcaggaatatcataaccgtgcacgtgataagcatttt
gagcatctagcacctagtctgggtaaagcacgaaaggagcatgcattccctccagatgaa
atcaactcacacagagaacatcttcataatgatttaacaccagatgcagttgcttcaaag
aaaccaaaaatgaggaagaaagatattgataattctgcttcaagctctggtcccagcatt
cctaatagtcaaggagtcattaccaacttccgtgagctggtggaggacttctgtggaaaa
gcagaaattcctgataatgcagatggcgatgattggttatcaattccactgaatgatgtt
aaggttcttgtaaatgaaattacctatgttcgatcaaaggagatgttgcatgtgattcct
atggatactctcactagtctattacatgtgatagaccgtcagatcagatgttctcaggga
ttatcaatagatgggaaaggaaatcctgatgctgaggacactgaacacactgttttctct
gctttggagtctattcatgcggcgctagcaatcatgacccaccgtgatatgccaaagcag
ctctaccgggaagagcttatcgagcgcattattgatttctcaagacatcagataatggat
tgtatggctgcaagtaacccaaccttccgagctctctacaagccagctggaaatgttgca
aatgatggagatgaagacgaggacgacgtggaaaatggacaggctagcaaaaagaggcgc
actgcttctaatttaagcgcaaggaaatcttctgcaaacaaagtttctgcttctatatat
tctgctgtgcagaaactatgcttgatattgggctttcttaaagaacttctcacaacggtg
cgcttatcagatagttgtatcctgcagttagcaaaaacctgctttactacattcctggtg
gacaatatgcagcttttacaattgaaggcgatcgatgttatctgcacggttttttcatca
tatacacaacacaggacttacgtgattgatgaaacactttatcttgtccgtaagttacag
ttctcgaaaaatgctatcagaacttaccatctagctgacgatgagcaaaaacaaatccag
atgataactgccctgctagttcacttggtccagttcagcgcaaatgttcctgatagctta
aagggaacagtaaattggagcactatcattgatgcctcagttgattctagttatccaatt
aactgccatgaagcagcaacagaggcttgttgccttttttggaccaatgtgcttcaacgt
ttcactgctgctaaatctcaagatatgtcagaagccaaagggattatagaaaatcttgtt
caggacttgcttacagtattaaacttgcccgagtatccagctgctgcccctatacttgag
gttctatgtgtgttgctgcttcaaaatgctggattgaattcgaaggacacttctgctcgc
tgctttgctattgatcttctcggtggtattgcatcgagattgaagcgtgattctgtcatc
tgtagcaaggagaagatttggatattgcaagaacttattgatgcagataacgatggctca
aaaatcttgaaaaacaaatgttgcgtttgtcgtgggggaagaggtataaatatggcatgt
gactcatgtggaagatgtttccactcagattgtatggggactggcagtcaggaaaactta
cagcgtgattctgtttgccctttatgcttttgcaagcaacagctcagtgtgttgcagtca
tactacgagttacaaaataaagaaaatggcaaaagaacatccacctcaaataagaaaaaa
tctgctacacctgaagaggtgacagcagtggatattgttcaacaaatactattgaattat
ctccaggaagctgggccacaagatgatggaaacctgttttctcgatggttctatctctgc
atgtggtacaaagaagacctacgttctcaggagaagatcatctactatcttgccagattg
aaatctaaggagattttgcgatattctggcaatggtttagtattgtccagagactgggct
aagaaaatttgtttggcacttggccagaagaactcgttttctcgggggtttgataaaatt
cttgccctccttttggctagcttgagagaaaattctcctgtaataagagcaaaggcctta
cgagctgtcagcagtatagttgaagctgatcctgaggtattgggtgacaagcgtgtccaa
tctgctgttgaaggaaggttttgtgactcggctatttctgttcgtgaagctgcacttgag
cttgttggaaggcatattgcttcacaccctgatgtgggcctgaagtatattgaaaaagtc
gctgaacggataaaggacactggagtaagtgttcgcaaacgtgcgatcaaaattattcgt
gatctttgtgcttcaaatccaaacacagatacaactcatgcctttgtggagattatttcg
cgtgttaatgatgaggaatcaagtgtacaggatcttgtttgcaaaacgttttatgagcta
tggtttgacgaaccaattgggagccataaacacttggttgctgatggtagttcagttcct
atggagattgcaaaaaagactgagcaaattgttgacatgttgaaaaagatgcccaatcat
caaccgcttattaccattataaaacgtagtttgactctcgatttcctcccgcagtcaagt
aaggcctcaggcattaactcatccatgatgtcatcacttcggaagcgttgtgaattgata
tgtaaacgcttgttagaaagaatattgcaggttgaggagggagctgataacgaggcaaaa
gtccacacacttccttatgttcttgtcttgcaagcattttgtattgtggatcccaccctc
tgcactccagtaactgatccttctcagtttgttgtgacgcttcaaccataccttaagaat
aaggttgacagtaaatcaactgcccagttacttgaaagtataatttttgtgattgattct
gttcttccactcatacgtaagccaccacaaactgtggtagaagaacttgagcaggatctg
aagcagatgatagttcgccactcttttttgacagttgtacatgcctgcatcaagtgtctt
tctgcccttagcaatgcagcatccagagggccaaagttatttgagcatcttgttagcatt
ttctacaagcatctgtctggtcctaattctgatagtcaggtgctgggtcgatcattgttt
tgtcttggcctgctccttagatatggttataaactgatgacagcatcagaaaaccaactt
gatttcccaaagattcttgatttgctgaagagaaggtatcttctcaaggaggatttcagc
ttgaaggttcgagctttgcaggctttgggatacatacttattgcaaagcctgagtttatg
ctgcagaaagatatcttgaatctaatagaggcatcactatcttctgatgtagattatagg
ttaaagatgcaaggtttgcaaaacctatgtgaatatctccgtgatgcggaaagccaactc
acggctgagagtacaggcaagcctgctgtacagtatgcagctaatggtggaagtgaagta
cctgtagctgctggtgcgggagacaccaacatatgcggtggtattatccaattgtattgg
aattctattcttgaaagatgcttggatatgaatgatcaagttcgtcatgctgcactaaag
attgtggaaattgttcttcgccagggtttagttcaccccattacttgtgttccacacctt
atatcacttgaaactgacccagtggaggcgaactcaaagttgtctcatcatttgctgatg
aatatgaatgaaaagtatccttcatttttcgaaagccgcttgggtgatggcttacaaatg
tcatttagattctttgaggccatagtcagcaaccataacatggcagcaaccaacatgaaa
tcaaatccgattgcatttgttaaacctggcatatctagaatataccgtcttatccgtgca
aatcgaaattcgagaaacaaatttgtacactcaatagtacgcaaatttgtatctgacggc
cggagttaccccacgatcggctttcttgtatactgtgctgaagttcttgcgtctctccct
ttcacatgccctgatgaaccactttacttggtctatgatataaatcgagttattcaaatt
agagctggtgcaatcgagtcaaatttgaagaattggacttcgctggatcagcaacaagat
atggcaggtatccctggatatactggtgatgttatgcatgagcctggggggtattctgac
cagaacgtggcagatatttgtcaaaggacgcttaacaatccttgtagcacgtcaggtgtg
gatatgggtaaacttcagggagattgccatgaggcgatagctcttcagctccttctcaaa
ctgaagagacacttgaaaattgtctacagtttaactgatgctcgctgtcaggcattttct
ccgaaggatgcaccaaaatctgctgaagccttctccaagcagaatatcccacttaacatt
aacaacactaacaccagcttgccgagctgcctgcaggatgtggcgcgcgtataccaggat
ttcaagacattgctgcgagaagatgccatggactatgtaatgtacaccgccgcaacggtt
caaaaaaagcgtccaactccaagaagctcgtcaaaagttaggaagccagtgcctgttaca
agaggccgtggtggtggtggtcgtggccgcggtggtggtgatgatgacggccatgacact
gacgacgacgaatggagtggagggccaaggatgctggactttggcgctcaggcagttact
ggtggccgagtaacgaggcagagggtccaagtatga
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